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College of Natural Sciences

ASTR 110 Survey of Astronomy (3)

Introduction to the astronomical universe: sky and celestial objects, planetary motion, planets and the Solar System, Sun and stars, the Milky Way and galaxies, cosmology and the universe.

ASTR 110A Survey of Astronomy (3)

Introduction to the astronomical universe: sky and celestial objects, planetary motion, planets and the Solar System, Sun and stars, the Milky Way and galaxies, cosmology and the universe.

ASTR 110L Survey of Astronomy Laboratory (1)

Observations of constellations and the night sky, the sun and moon, planets, stars, and deep-sky objects; laboratory and observational experiments illustrating basic concepts in astronomy. Offered in the evening. Pre: 110 (or concurrent), or consent.

ASTR 130 Introduction to Archaeoastronomy (3)

Astronomy and celestial lore in ancient cultures: Neolithic Europe, Mayan, Mesoamerican, Egyptian, Mesopotamian, American Indian, Chinese, and Polynesian. Concepts of the cosmos, calendars, eclipse predictions, motion of celestial bodies, and navigation.
Construction of simple observing tools.

ASTR 150 Voyage through the Solar System (3)

An illustrated voyage through the Solar System based on recent scientific results. The class highlights the origin, evolution, and current knowledge of the eight planets, their moons, asteroids, comets, and one star, the Sun. Field trip. (Cross-listed as ERTH 105)

ASTR 185 Introduction to Astronomical Research (1)

Introduction to astronomical research, including literature resources, basic computing skills, software tools, data analysis, scientific communication, and research opportunities. Prepares students for effective internships and directed research projects. ASTR and ASTP majors only. A-F only. (Spring only)

ASTR 210 Foundations of Astronomy (3)

A rigorous overview of modern astronomy: solar system, stellar, galactic and extragalactic astronomy and cosmology. For science and engineering students. Pre: 110; PHYS 151 or PHYS 170.

ASTR 241 Foundations of Astrophysics I: The Solar System (3)

Solar system astrophysics. Dynamics of planets, satellite systems, asteroids and comets;
planetary atmospheres and internal structure; thermal balance; the Sun as a star. Introduces numerical computing. A-F only. Pre: PHYS 170, MATH 242 or 252A, and PHYS 272 (or concurrent). (Fall only)

ASTR 242 Foundations of Astrophysics II: Galaxies and Stars (3)

Stellar and galactic astrophysics. Stellar magnitudes, colors, distances, and spectra. Galactic structure and evolution, active nuclei, large-scale structure, Big-Bang cosmology. Stellar interiors, nuclear “burning,” main-sequence and evolved stars. Introduces computer programming. A-F only. Pre: 241, PHYS 274 (or concurrent), and MATH 243 (or concurrent) or 253A (or concurrent). (Spring only)

ASTR 280 Evolution of the Universe (3)

The Big Bang, origin of the elements, formation and evolution of galaxies and stars. Pre: 110 or 210 or 241 or 242, or consent

ASTR 281 Astrobiology (3)

Are we alone in the universe? Modern astronomical, biological, and geological perspectives on this fundamental question. Searches for life on Mars, oceans on Europa, planets orbiting other stars. Space exploration and colonies, interstellar spaceflight and communication. Pre: 110 or 210, or consent. (Spring only)

ASTR 300 Observational Astronomy (3)

Principles and techniques of optical and near-infrared astronomical observation. Astronomical coordinate systems. Telescopes, cameras, spectrographs, and detectors. Astrometry, photometry, and spectroscopy of astronomical objects. A-F only. Pre: 210 or 242; PHYS 152 or 274; MATH 216, 242, or 252A. (Fall only)

ASTR 300L Observational Astronomy Laboratory (2)

Optical and near-infrared astronomy laboratory. Error analysis, properties of light, data, and image processing. Astrometric, photometric, and spectroscopic measurement. A-F only. Pre: 300 (or concurrent); PHYS 152 or 274; PHYS 152L or 274L; MATH 216, 242, or 252A. (Fall only)

ASTR 301 Observational Astronomy Projects (4)

Astronomical observational research projects. Students use astronomical data and process telescopic observations to produce scientific results, and present these orally and in writing. Students prepare for independent research projects and present research plans orally. A-F only. Pre: 300 and 300L. (Spring only)

ASTR 320 Astronomical Spectroscopy (3)

Introduction to astronomical spectroscopy. Stellar atmospheres, line formation, elements of radiative transfer. Phases of interstellar medium. Emission line diagnostics. Doppler shift and kinematics. A-F only. Pre: 210 or 242; PHYS 152 or 274; MATH 216 or 242 or 252A. (Spring only)

ASTR 380 History of Cosmology and Scientific Thought (3)

History and intellectual context of astronomical discovery; the evolution of ideas of space, time, and motion from the Babylonians to relativistic cosmologies; emphasis on the interaction of astronomy with the history of ideas. Pre: any ASTR or PHYS course. (Spring only)

ASTR 399 Directed Study (V)

Individual reading, observation, or experimentation in astronomy and astrophysics. Repeatable four times. Pre: consent.

ASTR 423 Stellar Astrophysics (3)

Advanced survey of stellar astrophysics, including application of astrometry, photometry, and spectrometry to determine fundamental stellar properties; stellar structure and evolution of single and binary stars; astrophysical distance determination methods; stellar nucleosynthesis. Pre: 242 and 300, and PHYS 480.

ASTR 426 Galaxies & Cosmology (3)

Survey of extragalactic astronomy and cosmology, including: galaxy morphology and kinematics; luminosity functions; dark matter; properties of galaxy groups/ clusters; gravitational lensing; redshifts; cosmological models; the Big Bang; thermal history of the Universe; structure formation. A-F only. Pre: 300 (or concurrent); PHYS 152 or PHYS 274; MATH 216 or MATH 242 or MATH 252A. (Alt. years)

ASTR 430 The Solar System (3)

Observations and physical nature of planets and moons, asteroids, comets, and other small bodies; formation of the Solar System; discovery of other planetary systems; solar activity. Pre: 300; and PHYS 152 or 274; and MATH 216, 242, or 252A. (Alt. years)

ASTR 470 General Relativity & Cosmology (3)

Introduction to general relativity & cosmology. Spacetime metrics, geodesics, Einstein field equations, black holes. Geometry of the universe, redshift, cosmological distances. Cosmological models, dark matters, dark energy. Big Bang nucleosynthesis, recombination, cosmic microwave background, inflation. Pre: PHYS 274; MATH 244 (or concurrent) or MATH 253A (or concurrent). Recommended: 242. (Alt. years: fall) (Cross-listed as PHYS 470)

ASTR 494 Senior Research Project (1)

Seminar focusing on development of professional skills for astronomical research, and on scientific writing as a tool for organizing research. A final paper describing a supervised research project is required. Repeatable one time. A-F only. Pre: 301; 399 (or concurrent) or PHYS 399 (or concurrent).

ASTR 601 Being a Professional Astronomer (1)

Seminar for beginning graduate students focusing on professional skills needed for astronomy and discussing possible research opportunities. Repeatable one time. ASTR majors only. Graduate students only. CR/NC only. (Fall only)

ASTR 622 The Interstellar Medium (3)

Astrophysics of diffuse matter, HII regions, molecular clouds, etc. Pre: consent. (Alt. years)

ASTR 623 Stellar Interiors and Evolution (3)

Structure and evolution; energy sources, radiative processes; relations to observables. Pre: consent. (Alt. years)

ASTR 626 Galaxies (3)

Observations and stellar dynamics of elliptical and spiral galaxies including our galaxy, globular clusters, and dark matter. Galaxy formation and evolution. Pre: consent. (Alt. years: spring)

ASTR 627 Cosmology (3)

Geometry and evolution of the universe. Dark matter. Early universe. Formation of large–scale structure, galaxies, and clusters. Cosmological models. Pre: consent. (Alt. years)

ASTR 630 The Solar System (3)

Survey of observational data and physical concepts on planets and smaller bodies; formation of planetary systems; solar activity. Pre: consent. (Alt. years)

ASTR 631 Radiative Transfer Stellar Atmospheres (3)

Excitation, ionization, and radiative transfer in stellar atmospheres; model atmospheres, formation of line and continuum radiation. Pre: consent. (Alt. years)

ASTR 633 Astrophysical Techniques (3)

Telescopes, positional astronomy, photon detection, error analysis, photometry, spectroscopy. Pre: consent. (Fall only)

ASTR 634 Astronomical Instrumentation (3)

Design and operation of astronomical instrumentation. Physics of optical and infrared detectors. Wavefront sensors and adaptive optics. Radio and infrared interferometry. Optical design: methods and software. A-F only. Pre: 633 (with a minimum grade of B-). (Alt. years: spring)

ASTR 635 Fundamentals of Astrophysics (3)

Applications of fundamental physics to astrophysical situations. Elements of general relativity. Basics of hydrodynamics and shock waves. Radiative processes, high energy astrophysics. Modern dynamics. Pre: consent. (Fall only)

ASTR 640 General Relativity (3)

Introduction to gravity and general relativity. Tensor basics, classical scalar, vector and tensor field theories. Exact symmetric Einstein equation, gravito-magnetic weak field, and radiation solutions. Pre: consent. (Alt. years)

ASTR 641 Active Galaxies (3)

Phenomenology of active galactic nuclei, black holes, accretion flows and jets, emission mechanisms, host galaxies, and cosmic evolution. Pre: 635 or consent. (Alt. years: spring)

ASTR 657 Astrochemistry-A Molecular Approach (3)

Formation of astrobiologically important molecules and their precursors in the interstellar medium and in our solar system: first principles and latest trends. Pre: consent. (Fall only) (Cross-listed as CHEM 657 and ERTH 657)

ASTR 699 Directed Research (V)

Repeatable unlimited times. Pre: consent

ASTR 700 Thesis Research (V)

Repeatable unlimited times.

ASTR 734 Astronomy Seminar I (V)

Selected advanced topics in astronomy and astrophysics. Available for 1 to 3 credit hours by arrangement. Repeatable unlimited times. Pre: consent.

ASTR 735 Astronomy Seminar II (V)

Selected advanced topics in astronomy and astrophysics. Available for 1 to 3 credit hours by arrangement. Repeatable unlimited times. Pre: consent.

ASTR 736 Astronomy Seminar III (V)

Selected advanced topics in astronomy and astrophysics. Available for 1 to 3 credit hours by arrangement. Repeatable unlimited times. Pre: consent.

ASTR 740 Astrobiology Seminar: Origin, Evolution and the Role of Water for Life in the Universe (1)

Interdisciplinary research topics in astrobiology as they relate to the theme of water: formation in space, role in creating pre-biotic molecules, delivery to earth, and terrestrial planet habitability. Repeatable three times. Pre: graduate level sciences and ideas, or consent.

ASTR 750 Scientific Grant Writing (1)

Principles of scientific grant writing are taught by working on draft proposals through a mix of lectures, discussions, and hands on activities. The final proposal will be reviewed and evaluated via a review panel. Graduate students only. A-F only. (Fall only)

ASTR 758 Programming and Algorithms for Astronomers (2)

Distillation of modern computer science fundamentals and paradigms, with applications
to astronomy. Common algorithms and essential programming techniques. Assignments include extensive Python programming practice. Open to graduate students in any physical science. Graduate students only. (Alt. years)

ASTR 760 Modern General Relativity (3)

Differential geometry, special relativity, Einstein equations, gravitational phenomena, equivalence principles, black holes, gravitational waves, cosmology, relativistic stars, experimental tests, computational techniques. Graduate students only in PHYS or ASTR. (Alt. years: fall) (Cross-listed as PHYS 760)

ASTR 777 Star Formation (2)

Molecular clouds, collapse processes, physics of circumstellar disks and accretion, properties of young stars, outflows and jets, formation of binaries, extrasolar planets and planet formation, meteorites and the early solar system. Pre: graduate standing or consent. (Alt. years: spring)

ASTR 790 Astro-ph Seminar (1)

Seminar discussions of the most recent research papers covering all areas of astronomy. Student lead discussion sessions and discuss papers of their choice during the semester. ASTR majors only. Graduate students only. CR/NC only. (Fall only)

ASTR 791 Cosmology Seminar (1)

Students and researchers will review and discuss the most important and exciting cosmological results in depth. ASTR and PHYS majors only. Graduate students only.

ASTR 800 Dissertation Research (V)

Repeatable unlimited times

BIOL 101 Biology and Society (3)

Characteristics of science, historical development of scientific concepts, and interaction of society with science illustrated by topics from biological science. Not a BIOL major elective.

BIOL 101L Biology & Society Laboratory (1)

(1 3-hr Lab) Explores connections between biological principles and everyday life with a focus on the environment. Topics include environmental health and sustainability with examples from Hawai‘i. Not a BIOL major elective. Pre: BIOL 101 (or concurrent). (Cross-listed as SUST 111L) DY

BIOL 104 Marine Option Program Seminar (1)

Overview of ocean issues and organizations involved with marine activities, management, education, research, and business. Exploration of internships, research, and career opportunities. Preparation of resumes, proposals, and professional presentations. Not a BIOL major elective. (Cross-listed as IS 100)

BIOL 123 Hawaiian Environment Science (3)

Characteristics of science and interaction with society illustrated by topics in geology, astronomy, oceanography, and biology of Hawaiian Islands. Not a BIOL major elective.

BIOL 171 Introduction to Biology I (3)

Introductory biology for all life science majors. Cell structure and chemistry; growth, reproduction, genetics, evolution, viruses, bacteria, and simple eukaryotes. Pre: CHEM (131, 151, 161, 171, or 181A) or concurrent, and BIOL 171L (or concurrent), or consent.

BIOL 171L Introduction to Biology I Lab (1)

(1 3-hr Lab) Laboratory to accompany 171. A significant portion of class time is dedicated to writing instruction, and requires a minimum of 4,000 words of graded writing. Pre: CHEM (131, 151, 161, 171, or 181A) or concurrent, and BIOL 171 (or concurrent) or consent.

BIOL 172 Introduction to Biology II (3)

Anatomy, physiology, and systematics of plants and animals; behavior; ecosystems, populations, and communities. Pre: CHEM (131, 151, 161, 171, or 181A) or concurrent, and BIOL 172L (or concurrent), or consent.

BIOL 172L Introduction to Biology II Lab (1)

(1 3-hr Lab) Laboratory to accompany 172. Pre: CHEM (131, 151, 161, 171, or 181A) or concurrent, and BIOL 172 (or concurrent) or consent.

BIOL 220 Biostatistics (4)

(3 Lec, 1 3-hr Lab) Introduction to statistical approaches in biology. Students will learn how to formulate hypotheses, test them quantitatively, and present results. Students will analyze biological datasets using the computer language R. A-F only. Pre: 171 or 172 or BOT 101; MATH 134 or higher, or MATH assessment exam. (Cross-listed as BOT 220)

BIOL 265 Ecology and Evolutionary Biology (3)

Principles of ecology and evolution for life science majors stressing integrated approach and recent advance. A-F only. Pre: C (not C-) or better in 171/171L, 172, 172L (or concurrent).

BIOL 265L Ecology and Evolutionary Biology Lab (1)

(1 3-hr Lab) Laboratory to accompany 265. A significant portion of class time is dedicated to writing instruction, and requires a minimum of 4,000 words of graded writing. Pre: C (not C-) or better in 265 (or concurrent).

BIOL 275 Cell and Molecular Biology (3)

Integrated cell and molecular biology for life science majors. Modern advances in recombinant DNA technology. A-F only. Pre: C (not C-) or better in 171/171L and CHEM 272. (Cross-listed as MCB 275)

BIOL 275L Cell and Molecular Biology Lab (2)

(1 4-hr Lab) Laboratory for Cell and Molecular Biology. A-F only. Pre: C (not C-) or better in 275 (or concurrent) and CHEM 272.

BIOL 295 Service Learning for Biology Majors (V)

Directed participation on tutorials and related activities in public schools and approved community and UH Mānoa organizations. A-F only. Repeatable one time. Pre: 265/265L, 275/275L, and consent.

BIOL 301 Marine Ecology and Evolution (3)

Ecological and evolutionary factors creating and maintaining patterns of biological diversity in major marine ecosystems. Emphasis on the biphasic life histories of many marine organisms. The development of quantitative skills and critical thinking. MBIO majors only. A-F only. Pre: C (not C-) or better in 265, 301L (or concurrent), and OCN 201; or consent.

BIOL 301L Marine Ecology and Evolution Lab (2)

(1 3-hr Lab) Laboratory to accompany 301. MBIO majors only. A-F only. Pre: C (not C-) or better in 301 (or concurrent).

BIOL 304 Biotechnology: Science and Ethical Issues (3)

Introduction to the concepts, goals, ethical issues and consequences of biotechnology using real-life case studies of GMOs, cloning, DNA fingerprinting, gene therapy and genetical engineering. Pre: 171 (with a minimum grade of C) or consent. (Cross-listed as MBBE 304)

BIOL 305 Ecology (3)

General survey of the principles of ecology. Focus on processes influencing the distribution and abundance of organisms, interactions among organisms, and interactions between organisms and the environment. A-F only. Pre: BIOL 171; BIOL 172 or BOT 201. (Cross-listed as BOT 305)

BIOL 306 Ethology (3)

Introduction to animal and human ethology and sociobiology; emphasis on social and interspecific behavior, its causes and adaptive significance. Lab optional. Pre: 171 and 171L and 172 and 172L or ANSC 201; or consent.

BIOL 306L Ethology Lab (1)

(1 3-hr Lab) Application of methods in the study of animal behavior by demonstrations, labs and projects. Pre: 306 (or concurrent).

BIOL 310 Environmental Issues (3)

Global environmental problems in historical perspective; physical, biological, sociocultural views. Pre: one of 101, 123, or GEO 101; or consent.

BIOL 325 Biology of the Vertebrates (3)

Introduction to the evolution and systematics of vertebrates, with emphasis on comparative morphology, physiology, and ecology. Pre: BIOL 265. Co-requisite: 325L.

BIOL 325L Biology of the Vertebrates Lab (2)

(2 3-hr Lab) Laboratory to accompany 325. Pre: 172 and 172L. Co-requisite: 325.

BIOL 331 Marine Mammal Biology (3)

Overview of marine mammal science, significance and roles of marine mammals in their ecosystems, and marine conservation issues. Current research topics in marine mammal science will also be covered. Pre: C (not C-) or better in 171/171L, 172/172L, and 265, 265L; or consent.

BIOL 340 Genetics, Evolution and Society (3)

The role of genetics in evolution, medicine, behavior, plant and animal breeding and technology; its impact on today’s society. Not a BIOL major elective. Pre: one semester of biological science at college level or consent. (Cross-listed as CMB 351)

BIOL 345 Parasitology (2)

Animal parasites of man, and domestic and wild animals; systematics, comparative morphology, life history, pathology, treatment, control. Pre: 275.

BIOL 350 Sex Differences in the Life Cycle (3)

Human sex differences, their biological basis and significance; genetic, hormonal, and behavioral determinants of sexual differentiation; biology of gender, sexuality, parenting, menopause, and aging. Pre: one semester of biological science. (Cross-listed as WGSS 350)

BIOL 360 Island Ecosystems (3)

Characteristics of island biota; examples from Hawai‘i and the Pacific. Impact of island and continental cultures; policy and ecosystem endangerment; contemporary legislation, policy, and management practices. Pre: one semester of biological science or consent. Not a BIOL major elective.

BIOL 363 Biological Field Studies (V)

Biological survey, collection, and analysis techniques will be reviewed and applied through field studies. Students will be introduced to the uniqueness of the Hawaiian environment and its diversity of life. Emphasis on diversity, evolution and ecology. Repeatable up to six credits. A-F only. Pre: C (not C-) or better in 265/265L (or equivalent), or consent.

BIOL 375 Genetics (3)

Genetic concepts at advanced undergraduate level; genetic transmission, recombination, gene action, mutation, population and evolutionary genetics. A-F only. Pre: 275 or consent.

BIOL 375L Genetics Laboratory (2)

(1 4-hr Lab) Experiments with a variety of organisms to illustrate principles discussed in BIOL 375. Pre: 275/275L, 375 (or concurrent) or consent.

BIOL 390 Communicating in Biological Sciences (3)

Combined lecture/lab impart essential knowledge and skills in technical writing, poster design, and oral presentations for effective communication for life science majors. Research papers, lab reports, project proposals, conference presentations are covered. A-F only. Pre: C (not C-) or better in 171/171L, 172/172L, and ENG 100.

BIOL 395 (Alpha) Teaching Internship (2)

Teaching internship in the Life Sciences that includes the preparation and demonstration of laboratory experiments or classroom activities. (B) general; (C) oral emphasis, includes emphasis on instruction in oral communication. Repeatable one time. Pre: consent

BIOL 400 Ocean Internships and Research (V)

Students carry out marine-related internships, practica, research projects or field experience on-or off-campus with faculty guidance. Repeatable one time. A-F only. Pre: minimum cum GPA of 2.5, junior or senior standing in any field of study and IS 100/BIOL 104 or consent, project proposal. (Crosslisted as IS 400)

BIOL 401 Molecular Biotechnology (3)

General principles, applications, and recent advances of the rapidly growing science of biotechnology. Topics include impact of biotechnology on medicine, animal sciences, environment, agriculture, forensics, and economic and socio-ethical issues. Pre: C (not C-) or better in 275 or consent. (Cross-listed as MBBE 401)

BIOL 402 Principles of Biochemistry (4)

Molecular basis of living processes in bacteria, plants, and animals; emphasis on metabolism of carbohydrates, lipids, proteins, and nucleic acids. Pre: C (not C-) or better in 275/275L, and CHEM 273; or consent. (Cross-listed as MBBE 402)

BIOL 403 Field Problems in Marine Biology (4)

Integrated program of intensive lectures, laboratory experiments, and field research that focus on the biological processes that shape the lives of marine organisms. A-F only. Limited space; enrollment by consent; GPA considered. Pre: C (not C-) or better in 301/301L and consent.

BIOL 404 Advanced Topics in Marine Biology (3)

Current themes in marine biology and experience in scientific assessment. Emphasis on teaching writing and oral communication. Repeatable two times. MBIO majors only. A-F only. Pre: C (not C-) or better in 301/301L or consent.

BIOL 406 Biology of Marine Organisms (3)

Biology, physiology, and ecology of marine organisms and marine ecosystems, and the physical and chemical factors, which influence them. Cannot be used to satisfy BS-MB major requirements. Credit granted for only one of ZOOL 200, BIOL 301, or BIOL 406. Junior standing or consent. A-F only. Pre: 171 and 172. (Spring only)

BIOL 407 Molecular Cell Biology I (3)

Relationship between structure and function at macromolecular level. Pre: C (not C-) or better in 275/275L and CHEM 273, or consent. (Cross-listed as MCB 407)

BIOL 408 Molecular Cellular Biology II (3)

Cell structure and function. Structure, chemistry, and functions of organelles and macromolecules. Pre: C (not C-) or better in 407; or consent. (Cross-listed as MBBE 408 and MCB 408)

BIOL 408L Advanced Molecular and Cellular Biology Laboratory (2)

(2 3-hr Lab) A laboratory to accompany 407 and 408. Pre: 407 (or concurrent) or 408 (or concurrent). (Cross-listed as MCB 408L)

BIOL 410 Human Role in Environmental Change (3)

Human impacts through time on vegetation, animals, landforms, soils, climate, and atmosphere. Special reference to Asian/Pacific region. Implications of long-term environmental change for human habitability. Pre: with a minimum grade of B, one of 101, 123 or GEO 101 and either 310 or GEO 322; or consent. (Cross-listed as GEO 410)

BIOL 411 Corals and Coral Reefs (3)

The biogeography, evolution, ecology, and physiology of corals and coral reefs, and the application of this information to the management of coral reefs. Emphasis will be placed on processes such as dispersal, the evolution and operation of mutualisms, calcification,
reproduction, and the maintenance of diversity. Pre: 265 (or concurrent) or 301 (or concurrent). (Spring only)

BIOL 425 Wildlife and Plant Conservation (3)

Principles of conservation biology and wildlife management techniques, illustrated with animal, plant, and ecosystem examples. Examination of ethical, cultural, legal, political, and socio-economic issues impinging on conservation policy and practice. Group project and field trips. Pre: C (not C-) or better in 265/265L or consent.

BIOL 430 The Biology of Fungi (2)

Will introduce the diversity, ecology, evolution, and biology of the Kingdom Fungi. Focus on our current understanding of fungal evolution and diversity and how fungi interact with environments and hosts. Pre: (172, BOT 201) with a minimum grade of C; or consent. (Spring only) (Crosslisted as BOT 430 and TPSS 432)

BIOL 430L The Biology of Fungi Lab (3)

Will introduce the diversity, ecology, evolution, and biology of the
Kingdom Fungi. Focus on our current understanding of fungal evolution and diversity and how fungi interact with environments and hosts. Pre: (430 (or concurrent)) with a minimum grade of C, or consent. (Spring only) (Cross-listed as BOT 430L and TPSS 432L)

BIOL 440 Psychoactive Drug Plants (3)

Taxonomy, ecology, biochemistry, distribution, cultural history, and contemporary use of mind-altering drug plants; examples from primitive, traditional, and modern societies. Pre: junior standing, one semester of biological science, and either ANTH 200 or GEO 151; or consent.

BIOL 454 Natural History of Hawaiian Islands (3)

(2 Lec, 1 1-hr Lab) Geography, geology, climatology, biotic environment of Pacific Basin and Hawaiian Islands; endemism and evolution in terrestrial and marine biota. Pre: one semester of biological sciences at college level. (Cross-listed as BOT 450 and SUST 450)

BIOL 465 Fish Diversity (3)

Survey of fish biodiversity focusing on major lineages, their phylogenetic relationships, and their geographic distribution in light of evolutionary history. Taught spring semester in alternate years. Junior standing or higher. Pre: 171 and 172. (Alt. years: spring)

BIOL 465L Fish Diversity Laboratory (1)

(2 2-hr Lab) Overview of the major orders and families of fishes of the world; introduction to local Hawaiian fishes; coverage of basic fish anatomy; introduction to field and laboratory techniques in fish research. Junior standing or higher. Pre: 171, 172, and 465 (or concurrent). (Alt. years: spring)

BIOL 468 The Rise of Fishes: An Evolutionary History (3)

The origins and early evolution of fishes, with a focus on morphological innovations that have led to lineage divergence and adaptive radiation, and the nature of underlying processes associated with novel character trait evolution. A-F only. Pre: 265. (Alt. years: spring)

BIOL 470 Evolutionary Biology (3)

Process of evolution: genetic basis, natural selection, population genetics, speciation, the fossil record. Pre: 171 and 172. Recommended: a BIOL or ZOOL course at 300 or 400 level.

BIOL 472 The Biology of Cancer (3)

Integrative, in-depth focus on the genetics, cell biology, and molecular basis of cancer. Combination of classroom lectures and problem-based discussions in small groups. Addresses ethical implications of cancer research and treatment. A-F only. MCB or BIOL majors only. Senior standing or higher. Pre: 407 (or concurrent) and 408 (or concurrent) or consent. (Spring only) (Cross-listed as MCB 472)

BIOL 480 Life in the Soil Environment (3)

An interdisciplinary study of the diverse life in the soil beneath our feet that includes bacteria, fungi, protists, nematodes, arthropods, invertebrate, viruses, and the essential functional roles these organisms contribute to sustainability of the planet. Repeatable one time. Pre: 375 or TPSS/PEPS/SUST 371, or MICR 351, or consent. (Cross-listed as TPSS 480)

BIOL 480L Life in the Soil Environment Lab (1)

Laboratory to accompany 480. Technical examination of bacteria, fungi, protists, nematodes, arthropods, and other invertebrate, and the essential functional roles these organisms contribute to sustainability of the planet. Repeatable one time. Pre: 171L and 172L, or MICR 351L, or consent. Co-requisite: 480. (Crosslisted as TPSS 480L)

BIOL 483 Introduction to Bioinformatics Topics for Biologists (3)

Focuses on the use of computational tools and approaches to analyze the enormous amount of biological data (DNA, RNA, protein) available today. A-F only. Pre: (171 (or equivalent)) with a minimum grade of C, or consent. (Once a year) (Cross-listed as MBBE 483)

BIOL 485 Biology of the Invertebrates (3)

Body plans, development, cellular construction, physiological integration, natural history, and ecology of invertebrate animals. Emphasis on marine species, especially local ones. Pre: 172 and CHEM 161, or consent. Corequisite: 485L.

BIOL 485L Biology of the Invertebrates Lab (2)

(2 3-hr Lab) Pre: 172 and CHEM 161, or consent. Corequisite: 485.

BIOL 487 Biogeography and Evolution (3)

Study of the fundamental role that geography plays in evolution
and maintenance of species diversity. Pre: 171 and one of BIOL 172 or BOT 101. (Fall only)

BIOL 490 Mathematical Biology Seminar (1)

Reports on research in mathematical biology, reviews of literature, and research presentation. Required for Certificate in Mathematical Biology. Repeatable one time. Pre: junior standing or higher and consent. (Cross-listed as MATH 490)

BIOL 499 Biological Directed Research (V)

Development and completion of a research project under the direction of a faculty advisor. Repeatable two times, up to 12 credits, up to 6 credits apply towards BA and BS BIOL major requirements. A-F only. Pre: 2.5 GPA minimum, written proposal and consent.

BIOL 501 (Alpha) Biology Workshop for Science Teachers (V)

Principles taught in a conceptual and/ or hands-on manner either in a laboratory setting or in the field. (B) biotechnology; (C) ecology, evolution and conservation; (D) marine biology; (F) general biology. A-F only. Repeatable unlimited times. Pre: 171/171L, 172/172L, in-service teachers; or consent.

BIOL 603 Molecular Ecology (3)

) Practical introduction to molecular methods used to address ecological and evolutionary questions. Advanced undergraduate/graduate level. Focus on methods and application to independent research project. A-F only. Pre: 265/265L (or equivalent) or 275/275L (or equivalent), and 375/375L, and consent. (Alt. years)

BIOL 650 Population Genetics (3)

Mathematical, observational, experimental results on effects of mutation, selection, and systems of mating on distribution of genes. Analysis of non-experimental populations. Pre: consent. (Cross-listed as CMB 650) Professional Development Courses for Science Teachers.

BOT 100 Freshman Seminar (1)

Discussion of hot topics in botany, including conservation of rare plants, invasive species, marine botany, ethnobotany, poisonous plants, evolution in action, fungal networks, and careers in botany with emphasis on Hawaiian examples. Students should enroll in BOT 100 and 101/101L, or BOT 100 and BIOL 171/171L. Repeatable one time. A-F only. Corequisite: 101/101L or BIOL 171/171L. (Once a year)

BOT 101 General Botany (3)

Growth, functions, and evolution of plants; their relations to the environment and particularly to humans and human activities.

BOT 101A General Botany (3)

Growth, functions, and evolution of plants; their relations to the environment and particularly to humans and human activities.

BOT 101L General Botany Lab (1)

(1 3-hr Lab) Lab observations and experiments illustrating basic principles of plant biology. Pre: 101 (or concurrent).

BOT 107 Plants, People, and Culture (3)

Ethnobotany. Interactions between plants and people: use in religious, medical, and shamanic traditions; roles in cultural formation, destruction, and revolution; plant domestication and food systems; roles in human migration; cultural components of plant conservation. (Fall only)

BOT 107A Plants, People, and Culture (3)

Ethnobotany. Interactions between plants and people: use in religious, medical, and shamanic traditions; roles in cultural formation, destruction, and revolution; plant domestication and food systems; roles in human migration; cultural components of plant conservation. (Fall only)

BOT 130 Hawaiian Plants-Their Ecology and Cultural Significance (3)

Introduction to the native flora of Hawai‘i, its origin, evolution and ecology, and the observation, identification, and systematics of the Hawaiian flora.

BOT 130L Hawaiian Plants-Their Ecology and Cultural Significance Lab (1)

The exploration of concepts and the process of science through hands-on experience in studying Hawaiian and introduced plants, their ecology, and cultural significance. Pre: 130 (or concurrent).

BOT 135 Magical Mushrooms and Mystical Molds (3)

Impact of fungi in nature and on humankind. Selected historical events in which fungi played a significant role, their activities as decomposers and pathogens, and their uses as sources for mind altering drugs in religious ceremonies and in food and beverage production in various societies.

BOT 160 Campus Plants (3)

Nontechnical course emphasizing recognition of the many interesting tropical plants seen on campus; origin, status in Hawai‘i, and cultural and economic uses of campus plants.

BOT 200 Sophomore Seminar (1)

Presentations by faculty highlighting research in tropical ecosystems. Topics include alien species, biodiversity, ecosystem services, ethnobotany, marine ecology, plant-animal interactions, and systematics of Hawaiian species. Assigned reading and writing exercises from papers in current journals. Repeatable one time. A-F only. Pre: 101/101L or BIOL 171/171L. (Once a year)

BOT 201 Plant Evolutionary Diversity (3)

Significance of evolutionary trends in the plant world, including reproductive, morphological, and life history adaptations by algae, fungi, and vascular plants. Pre: 101 or college general biology. Co-requisite: 201L.

BOT 201L Plant Evolutionary Diversity Lab (1)

(1 3-hr Lab) Lab exercises in the morphology and systematics of land plants, fungi, and algae. Corequisite: 201.

BOT 220 Biostatistics (4)

(3 Lec, 1 3-hr Lab) Introduction to statistical approaches in biology.
Students will learn how to formulate hypotheses, test them quantitatively, and present results. Students will analyze biological datasets using the computer language R. A-F only. Pre: 101 or BIOL 171 or BIOL 172; MATH 134 or higher, or MATH assessment exam. (Cross-listed as BIOL 220)

BOT 300 Conservation Ethics (1)

Introduction to and discussion of ethical issues associated with biodiversity, ecology, and conservation biology. Repeatable one time. A-F only. Pre: any DB course or consent. (Once a year) (Cross-listed as SUST 310)

BOT 301 Plant Conservation Biology (3)

Introduction to the concepts and principles of plant conservation biology and to plant conservation-inpractice in Hawai‘i and elsewhere. A-F only. Pre: 305 or consent. (Once a year) (Cross-listed as SUST 313)

BOT 301L Plant Conservation Biology Lab (1)

Introduction to approaches, methods, and analyses used in the study and practice of plant conservation, with an emphasis on experimental design and problem-solving. Includes both laboratory and field components. A-F only. Pre: 305 or consent. Corequisite: 301. (Once a year) (Cross-listed as SUST 313L)

BOT 305 Ecology (3)

General survey of the principles of ecology. Focus on processes influencing the distribution and abundance of organisms, interactions among organisms, and interactions between organisms and the environment. A-F only. Pre: BIOL 171; BIOL 172 or BOT 201. (Cross-listed as BIOL 305)

BOT 310 Field Botany (5)

Combined lecturelaboratory with intensive field experience for observational and experimental field work in native/impacted Hawaiian ecosystems. Field experience typically held during spring break. Terrestrial, freshwater, and marine habitats considered. A-F only. Pre: 305 and consent. (Once a year)

BOT 350 Resource Management and Conservation in Hawai‘i (3)

Management of native Hawaiian organisms and terrestrial ecosystems with particular attention to strategies, planning, research, and management actions necessary to control alien influences and promote native species. Pre: college general biology.

BOT 357 Tropical forest Ecology (3)

Introduction to the ecological processes and principles of tropical ecosystems, and to conservation issues facing tropical forests, with a particular emphasis on the neotropics.
A-F only. Pre: BIOL 171 and BIOL 172, or BOT 101; and BIOL 265.

BOT 400 Senior Seminar (1)

Current research themes in botany presented in discussion format; reading current research papers. Oral presentations of primary research. Repeatable one time. BOT majors only. Senior standing and consent. A-F only. (Once a year)

BOT 420 Plant Form and Function (4)

(3 Lec, 1 3-hr Lab) Lecture/laboratory to examine the anatomy, physiology, morphology, and functional ecology of plants. Labs will develop skills in microscopy, experimental techniques for studying plant physiology, and basic functional ecology. A-F only. Pre: 101/101L or BIOL 171/171L; BOT 201/201L; or consent. (Spring only)

BOT 430 The Biology of Fungi (2)

Will introduce the diversity, ecology, evolution, and biology of the Kingdom Fungi. Focus on our current understanding of fungal evolution and diversity and how fungi interact with environments and hosts. Pre: (201, BIOL 172) with a minimum grade of C; or consent. (Spring only) (Crosslisted as BIOL 430 and TPSS 432)

BOT 430L The Biology of Fungi Lab (1)

(1 3-hr Lab) Introduction to the morphology and life cycles of
organisms in the Kingdom Fungi. Focus on learning how to identify a diversity of fungi based on macro- and microscopic features. Field trips to collect specimens. Pre: (430 (or concurrent)) with a minimum grade of C. or consent. (Spring only) (Cross-listed as BIOL 430L and TPSS 432L)

BOT 442 Medical Ethnobotany (3)

Survey and theory of plants used as medicines, cultural perspectives of herbal medicine, and the botanical/ chemical basis of allopathic and naturopathic medicine. Lecture/discussion, term paper or project. Pre: 461 or consent.

BOT 444 Ethnoecology and Conservation (3)

Ecological implications of cultural uses of plants. Examines the biological basis for, and ecological effects of traditional and local resource management systems. Pre: BOT 305 or BIOL 265/265L or consent. (Crosslisted as SUST 445)

BOT 446 Hawaiian Ethnobotany (3)

(2 Lec, 1 3-hr Lab) Methods and techniques of handling and identifying plant materials used by early Hawaiians and modern Hawaiians for house and canoe construction, clothing, household and fishing items, medicine, and food preparation. Reading, laboratory, and fieldwork. Pre: 440 or consent. (Cross-listed as SUST 446)

BOT 450 Natural History of Hawaiian Islands (3)

(2 Lec, 1 1-hr Lab) Geography, geology, climatology, biotic environment of Pacific Basin and Hawaiian Islands; endemism and evolution in terrestrial and marine biota. Pre: one semester of biological sciences at college level. (Cross-listed as BIOL 454 and SUST 450)

BOT 454 Plant Community Ecology (4)

(2 Lec, 2 3-hr Lab) Covers selected topics in plant population and community ecology. Strong emphasis on how ecology is practiced as a science. Labs take advantage of working outdoors in local natural areas. Pre: 305.

BOT 456 Plant-Animal Interactions (3)

Interdependence of plants and animals, emphasizing the influence of animals on plant fitness and evolution. Topics include pollination, fruit/seed dispersal, herbivory, and ant-plant mutualisms. Pre: 201/201L or BIOL 265/265L.

BOT 457 ‘Āina Mauliola: Hawaiian Ecosystems (3)

Comprehensive analysis of traditional Hawaiian and modern resource management practices. Rigorous overview of the dominant physical and biological processes from the uplands to the oceans in Hawai‘i. Pre: HWST 207/SUST 217 or HWST 307/SUST 317 or HWST/SUST 356.

BOT 458 Natural Resource Issues and Ethics (4)

Overview of the history of land, resources and power in Hawai‘i; players and processes influencing land and natural resources policies today explored from Native Hawaiian and other viewpoints. Extensive use of case studies. Pre: HWST 207/SUST 217 or HWST 307/ SUST 317 or HWST/SUST 356.

BOT 459 Strategies in Hawaiian Resource Use (3)

Analyzing diverse land and water use strategies of O‘ahu, from traditional Hawaiian, scientific and economic perspectives, through classroom and on-site lectures. Topics include traditional Hawaiian methods, modern development, threatened ecosystems, ecotourism and scientific research. A-F only. Pre: HWST 207/SUST 217 or HWST 307/SUST 317 or HWST/SUST 356.

BOT 461 Systematics of Vascular Plants (4)

(3 Lec, 1 3-hr Lab) “Hands-on” experience with Hawai‘i’s unique tropical flora; emphasis on recognition and identification of vascular plant families and the principles and methodologies that define them; evolution of biodiversity. Pre: 101 or college general biology.

BOT 475 Plant Ecology (4)

(3 Lec, 1 3-hr Lab) Ecological principles and process that determine patterns of plant distribution and abundance. Lectures cover theory and examples from primary literature. Labs cover study design, descriptive and experimental techniques, field skills, and data analysis and interpretation. A-F only. Pre: 305 or BIOL 305.

BOT 480 Algal Diversity and Evolution (4)

(3 Lec, 1 3-hr Lab) Principles of algal diversity, structure, and evolution. Identification of common Hawaiian algae. Develops written communication skills with significant attention paid to developing writing skills and emphasis on writing instruction. Pre: one of 101, BIOL 172, MICR 351, ZOOL 101; or consent.

BOT 600 Grant Writing and Your Career in Science (2)

Scientific grant writing from inception through management to completion; students will write a DDIG and participate in a panel. Professional skills including “rules,” job applications, interviews, transitioning from graduate student to academic or non-academic job. A-F only. Pre: current standing as a graduate student, or consent.

BOT 601 Foundations of Current Botany I (2)

Discussion of current research and classical papers important to modern concepts in history of science, plant diversity, plant interactions with the environment, and plant integration. Pre: graduate standing in BOT or consent. (Fall only)

BOT 602 Foundations of Current Botany II (2)

Discussion of current research and classical papers important to modern concepts in ecology, plant interactions with other plants or animals, and ecosystem functioning. BOT majors only. Pre: graduate standing in BOT or consent. (Spring only)

BOT 603 Darwin’s Origin of Species (2)

Study and discussion of Charles Darwin’s Origin of Species, 1st edition 1859, and related current literature. Graduate students only. A-F only. Pre: BA or BS in BOT, BIOL, GEOL, or related field; or consent. (Spring only)

BOT 606 Graduate Research Skills (2)

(1 Lec, 1 3-hr Lab) Survey of major research areas in the botanical sciences with emphasis upon research opportunities in Hawai‘i and an overview of 1) skills needed by botanical researchers including writing scientific papers and proposals, practicing ethical research procedures, and collection of specimens; and 2) equipment used by botanical researchers including computers, cameras, measuring and monitoring equipment, and global positioning systems. Lecture/ discussion, laboratory. Repeatable one time. Pre: graduate standing in biological science or approval.

BOT 610 Botanical Seminar (1)

Study and discussion of significant topics and problems in botany. Repeatable three times.

BOT 612 Advanced Botanical Problems (V)

Investigation of any botanical problem; reading and laboratory work. Repeatable nine times. Pre: consent.

BOT 620 Perspectives in Modern Botany (2)

Lectures by distinguished visiting professor on contemporary botanical topics in the lecturer’s area of expertise. No more than 6 credit hours may be counted toward the MS degree requirements. Repeatable five times.

BOT 621 Ecohydrology: Theory and Modeling (3)

Vegetative response to hydrologic controls and nutrient cycles; quantitative linkages between hydrological dynamics and ecological patterns/ processes. MatLab is used to develop and simulate ecohydrological models. Pre: college level calculus or consent. (Once a year)

BOT 640 Quantitative Ethnobotany (3)

Modern ethnobotanical field research project design, execution, data analysis, and documentation methods. Intended for students preparing to conduct field research studies. Lecture/discussion, term paper. Pre: 105 and one of 201, 461, ANTH 200, or BIOL 172.

BOT 644 Ethnoecological Methods (3)

Field techniques for assessing the ecological effects of cultural uses of plants. Emphasis on documenting traditional and local patterns of plant use and measuring the effects on plant individuals, populations, communities, and landscapes. Pre: previous course work in anthropology or biology.

BOT 648 Conservation Ethnobiology (3)

Practical field training experience for a scientific career conducting ethnobiological research. Repeatable one time. Pre: 640 or consent. (Summer only)

BOT 651 Invasion Biology (3)

Theories, models, patterns, and predictive methods relating to the introduction, establishment, and spread of introduced organisms. Application of principles of invasion biology to conservation and natural resource management. Pre: 456 or MICR 485; and BIOL 375; or consent.

BOT 652 Population Biology (3)

Theory and applications of population biology; behavior of population models, as revealed by analytical methods and computer simulation; application to population problems such as endangered species; discussion of classical and current literature in population biology. Pre: one of 456, NREM 680, PEPS 671, ZOOL 620, ZOOL 623; or consent. (Cross-listed as ZOOL 652)

BOT 653 Population Dynamics Models with R (3)

Learn advanced modeling techniques to investigate the dynamics of size-structure populations (using matrix and integral population models in R), and discuss various applications in ecology and conservation biology. Recommended: students have working knowledge of calculus. (Alt. years: fall)

BOT 654 Advances in Plant Ecology (2)

A researchoriented course focusing on recent advances in all areas of plant ecology. Involves critical review of recent literature, independent research project, oral and written presentation of project results. Repeatable three times. Pre: consent.

BOT 660 Ecological Statistics with R (3)

Learn how to choose appropriate statistical methods to test hypotheses in ecology, evolution, and conservation biology and applications using R as a platform. Lecture/discussion, term paper. Pre: ZOOL 631 or consent. (Alt. years: fall)

BOT 661 Hawaiian Vascular Plants (3)

(2 Lec, 1 3-hr Lab) Identification, systematics, evolution, and biogeography of native plants. Field trips. Pre: 461 or consent. (Cross-listed as SUST 661)

BOT 662 High Throughput Sequencing Approaches to Ecology and Evolution (3)

Fundamentals of experimental design, lab techniques and data analysis to conduct research using high throughput sequencing. Students will work in groups to conduct an amplicon sequencing study with ten samples. Repeatable one time. Pre: consent. (Alt. years: spring)

BOT 668 Nomenclature and Practical Systematics (2)

Modern issues of naming and classifying of organisms, with a botanical emphasis. Includes lectures, discussions, class projects, and field trips. A-F only. Pre: 461 (or equivalent) or consent. (Once a year)

BOT 669 Molecular Phylogenetics and Evolution (3)

Molecular approaches to evolution, phylogenetics, and systematics. Basic use of chloroplast DNA, mitochondrial DNA, nuclear DNA, and electrophoresis. Phylogenetic analysis using parsimony, distance, and comparative methods. Repeatable two times. Recommended: 201.

BOT 670 Scientific Teaching Tools to Promote Active Learning (2)

Graduate level course to train students in the pedagogical tools to enhance active learning in STEM classes. Includes discussions of the primary literature, demonstrations and practice using scientific teaching techniques. BOT or ZOOL or MBIO majors only. Graduate students only. (Alt. years: spring) (Cross-listed as ZOOL 670)

BOT 676 Environmental Physiology Seminar (2)

Environmental stress; pollution; salinity, geobotany, and other interactions between the environment and plant processes. Current literature emphasized at multidisciplinary and interdisciplinary levels. Pre: graduate status in a biological science, geosciences, etc.; consent for well-prepared undergraduates.

BOT 680 Marine Macrophytes Seminar (2)

Discussion of current literature in physiological ecology, cellular and molecular adaptations to environmental factors by marine plants. Repeatable four times. Pre: 480.

BOT 682 Physiological Ecology of Marine Plants (3)

Discussion of current studies in morphological, physiological, cellular, and molecular adaptation to marine environments by macroalgae, phytoplankton, and seagrasses. A-F only. Pre: upper division ecology class recommended, 480 (or equivalent), or consent. Co-requisite: 682L.

BOT 682L Physiological Ecology of Marine Plants Lab (1)

Field and laboratory research techniques and projects in the physiological ecology of algae and seagrasses. A-F only. Pre: upper division ecology class recommended, 470L (or equivalent), 480 (or equivalent), or consent. Co-requisite: 682.

BOT 690 Conservation Biology (3)

Theories and concepts of ecology, evolution, and genetics for conservation of biological diversity. Topics will include restoration ecology, management planning, laws and policies, biological invasions. (Cross-listed as NREM 690 and ZOOL 690)

BOT 699 Directed Research (V)

Research preliminary to thesis or dissertation research. Repeatable unlimited times. CR/NC only. Pre: consent of graduate committee.

BOT 700 Thesis Research (V)

Repeatable unlimited times. Pre: candidacy for MS degree and approval of thesis proposal.

BOT 750 Topics in Conservation Biology (V)

Advanced topics in conservation and environmental biology. Repeatable three times, up to twelve credits. A-F only. Pre: consent. (Cross-listed as ZOOL 750)

BOT 800 Dissertation Research (V)

Repeatable unlimited times. Pre: candidacy for PhD and approval of dissertation proposal.

CHEM 100 Chemistry and Society (3)

Introduction to chemistry for non-science majors. Discussion of basic chemistry concepts and their application to everyday life. No credit for science and engineering majors. A-F only. Students who successfully completed 110/SUST 120 with a grade of C or better will not be allowed to enroll in 100 without instructor override. Students who successfully complete 100 with a grade of C or better will not be allowed to enroll in 110/SUST 120 without instructor override.

CHEM 100L Chemistry and Society Laboratory (1)

Laboratory to accompany CHEM 100, 110, or SUST 120. Lab introduces fundamental applications of chemistry, with special emphasis on relevant topics and how chemistry relates to the real world. (For students in non-science fields.) A-F only. Pre: 100 (or concurrent), 110 (or concurrent), or SUST 120 (or concurrent).

CHEM 110 Chemistry in a Sustainable World (3)

Introduction to chemistry for non-science majors. Discussion of the role of natural and manmade chemicals in everyday life, with an emphasis on sustainable and environmentally-sensitive use of chemicals to improve our world. A-F only. Students who successfully completed 100 with a grade of C or better will not be allowed to enroll in 110/SUST 120 without instructor override. Students who successfully complete 110/SUST 120 with a grade of C or better will not be allowed to enroll in 100 without instructor override. (Cross-listed as SUST 120)

CHEM 131 Preparation for General Chemistry (3

For students lacking preparation in chemistry. Provides background in algebra and elementary concepts of chemistry in preparation for entering the General Chemistry sequence. A-F only. Pre: successful completion of placement exam.

CHEM 151 Elementary Survey of Chemistry (3)

Nonrigorous but adequate background in fundamentals. Preparation for technical training in life sciences.

CHEM 151L Elementary Survey of Chemistry Lab (1)

(1 3-hr Lab) Experiments introducing laboratory techniques and illustrating chemical principles. Pre: 151 (or concurrent).

CHEM 152 Survey of Organic and Bioorganic Chemistry (3)

Structure, nomenclature, properties, reactions of organic compounds emphasizing those of practical importance in related fields. Pre: 151, 162, or 171.

CHEM 152L Survey of Organic and Bioorganic Chemistry Lab (1)

(1 3-hr Lab) Techniques of preparation, purification, identification of organic compounds. Pre: 151L, 162L, or 171L; and 152 (or concurrent).

CHEM 161 General Chemistry I (3)

Basic principles of chemistry, including stoichiometry. Introduction to solution phase chemistry. Gas phase chemistry. Thermodynamics, including enthalpies of formation and reaction. Atomic structure, periodic trends, chemical bonding, molecular structure. Students who successfully completed 171 or 181A with a grade of C or better will not be allowed to enroll in 161 without instructor override. Students who successfully complete 161 with a grade of C or better will not be allowed to enroll in 171 or 181A without instructor override. Pre: C (not C-) in 131 or C (not C-) in 151 or successful completion of placement exam, or consent.

CHEM 161L General Chemistry Lab I (1)

(1 3-hr Lab) Laboratory experiments introducing techniques and fundamental principles of chemistry. Students who successfully completed 171 or 181A with a grade of C or better will not be allowed to enroll in 161 without instructor override. Students who successfully complete 161 with a grade of C or better will not be allowed to enroll in 171 or 181A without instructor override. Pre: 161 (or concurrent).

CHEM 162 General Chemistry II (3)

Continuation of 161. Liquids and solids. Solutions and colligative properties. Continuation of thermodynamics, including entropy and free energy. Principles and applications of chemical equilibrium, including acidbase chemistry (titrations, buffers). Kinetics. Redox reactions and electrochemistry. Pre: C (not C-) or better in 161.

CHEM 162L General Chemistry Lab II (1)

(1 3-hr Lab) Laboratory experiments introducing techniques and fundamental principles of chemistry. Pre: C (not C-) or better in 161L and 162 (or concurrent).

CHEM 171 Principles of Chemistry (4)

Principles, theories, elementary analytical methods of chemistry. Intended for physical science majors and engineers. Pre: Satisfactory Placement Exam score, and MATH 241 or MATH 242 or MATH 243 or MATH 251A or MATH 252A or MATH 253A. Co-requisite: 171L. Students who successfully completed 161 or 181A with a grade of C or better will not be allowed to enroll in 171 without instructor override. Students who successfully complete 171 with a grade of C or better will not be allowed to enroll in 161 or 181A without instructor override. (Fall only)

CHEM 171L Principles of Chemistry Lab (1)

(1 3.5- hr Lab) Laboratory experiments illustrating fundamental principles of chemistry. Students who successfully completed 161L or 181A with a grade of C or better will not be allowed to enroll in 171 without instructor override. Students who successfully complete 171L with a grade of C or better will not be allowed to enroll in 161L or 181A without instructor override. Co-requisite: 171. (Fall only)

CHEM 181A Honors General Chemistry (4)

Rigorous, in-depth introduction to chemical principles with emphasis on experimental and applied aspects of modern chemistry. Students who successfully completed 161 or 171 with a grade of C or better will not be allowed to enroll in 181A without instructor override. Students who successfully complete 181A with a grade of C or better will not be allowed to enroll in 161 or 171 without instructor override. Pre: satisfactory placement exam score and MATH 215 (or concurrent) or MATH 241 (or concurrent) or MATH 251A (or concurrent) with a minimum grade of C. (Fall only)

CHEM 181L Honors General Chemistry Laboratory (1)

(1 3-hr Lab) Laboratory experiments illustrating chemical principles involving advanced techniques and modern instrumentation. A-F only. Students who successfully completed 161L or 171L with a grade of C or better will not be allowed to enroll in 181L without instructor override. Students who successfully complete 181L with a grade of C or better will not be allowed to enroll in 161L or 171L without instructor override. Corequisite: 181A.

CHEM 272 Organic Chemistry I (3)

Molecular structure, stereochemistry, spectroscopy, mechanisms, reactions, and synthesis of organic compounds. Pre: C (not C-) or better in 162 or 171 or 181A.

CHEM 272L Organic Chemistry I Lab (2)

(1 4-hr Lab) Techniques, synthesis and qualitative analysis, applications of spectroscopy. Pre: C (not C-) or better in 162L, 171L, or 181L; and C (not C-) or better in 272 (or concurrent).

CHEM 273 Organic Chemistry II (3)

Continuation of 272. Molecular structure, stereochemistry, spectroscopy, mechanisms, reactions, and synthesis of organic compounds. Pre: C (not C-) or better in 272.

CHEM 273L Organic Chemistry II Lab (2)

(1 4-hr Lab) Techniques, synthesis and qualitative analysis, applications of spectroscopy. Pre: C (not C-) or better in 272L and 273 (or concurrent).

CHEM 274 Principles of Analytical Chemistry (3)

Selected methods and principles, e.g., phase equilibria, ionic equilibria, electrode equilibria, separations, spectroscopy, automation, and process control. Pre: C (not C-) or better in 162 or 171 or 181A, MATH 215 or MATH 241 or MATH 251A.

CHEM 274L Principles of Analytical Chemistry Lab (2)

(2 3-hr Lab) Phase separations, chromatography, titrimetry, spectrophotometry, etc. Pre: C (not C-) or better in 162L or 171L or 181L; and 274 (or concurrent).

CHEM 351 Physical Chemistry I (3)

Principles and theories; physico-chemical procedures. Pre: 274, 274L, PHYS 272, PHYS 272L, and MATH 243 or MATH 253A.

CHEM 352 Physical Chemistry II (3)

Continuation of 351. Pre: 351.

CHEM 352L Physico-Chemical Measurements (2)

(2 3-hr Lab) Laboratory on instrumentation, measurements, and data analysis in thermodynamics, spectroscopy, and other areas of physical chemistry. Emphasis on instruction in scientific reporting writing. Pre: 274L, 351, and 352 (or concurrent).

CHEM 372 Bioorganic Chemistry (3)

Mechanism of biochemical reactions, biophysical structure, techniques for studying biochemical reactions. Pre: 273 (with a grade of C or better) or graduate standing with consent, or departmental approval. (Fall only)

CHEM 380 Professional Ethics for Chemists (1)

Student team-led discussions of contemporary ethical issues and ethical decision making in chemistry using case studies and additional examples from the media. CHEM or BIOC majors only. CR/NC only. Pre: 274 (or concurrent). (Spring only)

CHEM 399 Directed Reading (V)

Directed reading and discussion of scientific journal articles culminating in a written literature review. Repeatable unlimited times. CHEM or BIOC majors only.Pre: minimum cumulative GPA of 2.7 or minimum in-major GPA of 3.0.

CHEM 399L Directed Research (V)

Directed laboratory research culminating in a written research report. Repeatable unlimited times. CHEM or BIOC majors only. A-F only. Pre: minimum cumulative GPA of 2.7 or minimum in-major GPA of 3.0.

CHEM 425 Synthesis and Analysis of Inorganic Compounds (3)

Lecture on advanced methods of preparation and characterization of inorganic compounds and materials. A-F only. Pre: 351 (or concurrent) or 461 (or concurrent). (Fall only)

CHEM 425L Preparation and Analysis of Inoraganic Compounds Laboratory (2)

Laboratory on preparative methods and analytical techniques and instruments in inorganic chemistry. A-F only. Pre: 425 (or concurrent). (Fall only)

CHEM 427 Advanced Inorganic Chemistry (3)

Classification, description, fundamental theory. Pre: 425.

CHEM 435 Experimental Methods in Materials Research (3)

(1 Lec, 2 2-hr Lab) Common experimental techniques in materials testing and research: x-ray diffraction, optical and electron microscopy, thermal and mechanical properties,
electrochemical methods—theory and hands-on experience. Pre: 351 (or concurrent) or ME 341. (Crosslisted as ME 435)

CHEM 445 Synthesis and Analysis of Organic Compounds (3)

Introduction to multi-step synthesis and instruments/analytical techniques used to characterize organic compounds. Retrosynthesis and diastereoselective reactions; spectroscopy (optical methods, NMR), mass spectrometry. Chromatography (GC, HPLC) and coupled techniques (GCMS, LCMS). CHEM or BIOC majors only. A-F only. Pre: 273 with a grade of C (not C-) or better, or departmental approval. (Spring only)

CHEM 445L Preparation and Analysis of Organic Compounds Laboratory (2)

Laboratory on the preparation of organic compounds and physical methods for their characterization. Includes optical methods (UV-vis, IR), chromatography (HPLC, GC), mass spectrometry (GCMS and LCMS) and NMR. A-F only. Pre: 273L with a grade of C (not C-) or better, or departmental approval. Co-requisite: 445. (Spring only)

CHEM 461 Physical Biochemistry (3)

Biochemical thermodynamics, chemical and enzyme kinetics, biomolecular structure, and biomolecular spectroscopy. A-F only. Pre: 162, PHYS 272, and MATH 242 or 252A with a grade of C or better for prerequisites.

CHEM 462 Advanced Biochemistry (3)

Advanced topics in biochemistry including nucleic acid replication, transcription, and translation; genetic and epigenetic regulation; bioenergetics and control of metabolism; alternative metabolic strategies; and enzyme structure and mechanism. A-F only. Pre: 372 and BIOL 402. (Spring only)

CHEM 462L Advanced Biochemistry Lab (2)

Advanced biochemistry lab techniques: protein purification and characterization, identification of unknown proteins, enzyme kinetics, ligand binding, enzyme kinetics, protein structure, and spectroscopy, with instruction in writing scientific reports. A-F only. Pre: 274L, 372, 462 (or concurrent), and BIOL 275L.

CHEM 600 Introduction to Research (1)

Introduction to field-specific methods and skills needed for success in graduate research. Includes training modules for safety, ethics, and library resources. Short faculty research overviews may also be given.CHEM majors only. Graduate students only. CR/NC only. (Fall only)

CHEM 601 Theory of Chemical Bonding (3)

Application of quantum mechanics and symmetry principles to descriptions of chemical bonding. Pre: graduate standing in CHEM.

CHEM 602 Chemical Applications of Spectroscopy (V)

Introduction to magnetic resonance, infrared, UV, and visible spectroscopy, emphasizing applications to organic and inorganic chemistry. Three topics each semester–1 credit hour per topic. Repeatable unlimited times in different topics. Pre: graduate standing in CHEM.

CHEM 622 Organometallics I (3)

Reactivity and reaction mechanisms of compounds containing metalcarbon bonds. Pre: 352 and 427.

CHEM 623 Coordination Chemistry (3)

Survey of Lewis acids and bases, coordination numbers, geometries, stereochemistry, ligand field theory, formation constants, and bioinorganic chemistry. Pre: 601 and 602 (or concurrent).

CHEM 624 Organometallics II (3)

Introduction to the principles of catalysis and the classes of catalytic reactions effected by organometallic compounds. A-F only. Pre: 622 and a minimum required grade for prerequisites of B.

CHEM 631 Methods of Instrumental Analysis (V)

Theory, instrumentation, applications. Three areas each semester-one credit hour per area. Repeatable unlimited times in different areas. Pre: 333 and graduate standing in CHEM or consent.

CHEM 641 Organic Structure Determination (3)

Interpretation of chemical and physical (primarily spectral) data in the identification of organic compounds. Pre: graduate standing or consent.

CHEM 642 Organic Synthesis I (3)

Modern synthetic methods with emphasis on the design and execution of multi-step sequences. Pre: graduate standing or consent

CHEM 643 Physical Organic Chemistry (3)

Theory of molecular structure, stereochemistry, and reaction mechanisms. Pre: 601 or consent.

CHEM 647 Organic Synthesis II (3)

Continuation of 642, and is the second half of a two-semester course in Modern Organic Synthesis. Pre: 642 and a minimum required grade for prerequisites of B. (Spring only)

CHEM 651 Chemical Thermodynamics and Statistical Mechanics (3)

Includes statistical thermodynamics, with application to chemical systems. Pre: graduate standing in CHEM.

CHEM 652 Chemical Kinetics and Reaction Dynamics (3)

Kinetics and chemical reaction dynamics of elementary reactions relevant to combustion processes, astrochemistry, chemical vapor deposition and planetary sciences. Pre: graduate standing in CHEM. (Spring only)

CHEM 653 Quantum Chemistry (3)

Rigorous introduction to quantum mechanics, including operator formalism, matrix formation, group theory, and perturbation theory; introduction to the electronic structure of atoms and molecules. Pre: graduate standing in CHEM.

CHEM 657 Astrochemistry–A Molecular Approach (3)

Formation of astrobiologically important molecules and their precursors in the interstellar medium and in our solar system: first principles and latest trends. Pre: consent. (Fall only) (Cross-listed as ASTR 657 and ERTH 657)

CHEM 658 Crystallography (3)

Crystal symmetry. Elementary x-ray physics. Diffraction theory and its application to crystal and molecular structure determination. Pre: 352 and MATH 244 or MATH 253A.

CHEM 661 Enzyme Reaction Mechanisms (3)

The chemical mechanisms of reactions catalyzed by enzymes in biochemical pathways, with an emphasis on the major types of cofactor and metal catalyzed reactions. Pre: graduate standing or consent.

CHEM 662 Computational Modeling in Chemistry (3)

Theory and application of computational modeling in chemistry. Statistical theory behind molecular dynamics simulations, application to modeling chemical systems, computer programming, and analysis of results. Graduate students only.

CHEM 691 (Alpha) Chemistry Seminar I (1)

Current topics in (D) physical; (E) organic; (Q) biochemistry; (Z) inorganic chemistry. Repeatable unlimited times. Pre: graduate standing.

CHEM 692 (Alpha) Chemistry Seminar II (1)

Continuation of 691. Current topics in: (D) physical; (E) organic; (Q) biochemistry; (Z) inorganic chemistry. Repeatable unlimited times. Pre: graduate standing.

CHEM 699 Directed Research (V)

Repeatable unlimited times. Pre: consent.

CHEM 700 Thesis Research (V)

Repeatable unlimited times. Pre: candidacy for MS degree and consent of thesis chair.

CHEM 721 Special Topics: Inorganic Chemistry (V)

Theory and applications. Repeatable unlimited times in different topics. Pre: consent.

CHEM 741 Special Topics: Organic Chemistry (V)

Theory and applications. Repeatable unlimited times in different topics. Pre: consent.

CHEM 751 Special Topics: Physical Chemistry (V)

Theory and applications. Repeatable unlimited times in different topics. Pre: consent.

CHEM 761 Special Topics: Biochemistry (V)

Theory and applications. A-F only. Repeatable unlimited times in different topics.

CHEM 800 Dissertation Research (V)

Repeatable unlimited times. Pre: candidacy for PhD degree and consent of dissertation chair.

ICS 101 Digital Tools for the Information World (4)

Fundamental information technology concepts and computing terminology, productivity software for problem solving, computer technology trends and impact on individuals and society. Emphasizes the utilization of operating systems and the production of professional documents, spreadsheets, etc.

ICS 101A Digital Tools for the Information World (4)

Fundamental information technology concepts and computing terminology, productivity software for problem solving, computer technology trends and impact on individuals and society. Emphasizes the utilization of operating systems and the production of professional documents, spreadsheets, etc.

ICS 102 Introduction to Data Science (3)

Overview of the field of data science. Introduction to subjects such as data format, processing, visualization, and storage. Special emphasis on historical and wider context, and simple practical examples. Repeatable one time. A-F only.

ICS 103 Introduction to Computer Science Principles (3)

General course that provides a broad overview of computer science. Will address abstraction, data and information, algorithms, programming, the Internet and the global impact of computers.

ICS 110 (Alpha) Introduction to Computer Programming (3)

Basic concepts needed to write computer programs. Simple program design and implementation using a specific programming language; (C) C; (D) through animations; (P) Python. Each alpha repeatable unlimited times, but credit earned one time only. ((P) Cross-listed as DATA 110P)

ICS 111 Introduction to Computer Science I (4)

Overview of the fundamentals of computer science emphasizing problem solving, algorithm development, implementation, and debugging/testing using an object-oriented programming language. Pre: Recommended: computer experience.

ICS 111A Introduction to Computer Science I (4)

Overview of the fundamentals of computer science emphasizing problem solving, algorithm development, implementation, and debugging/testing using an object-oriented programming language. Pre: Recommended: computer experience.

ICS 141 Discrete Mathematics for Computer Science I (3)

Includes logic, sets, functions, matrices, algorithmic concepts, mathematical reasoning, recursion, counting techniques, and probability theory. Pre: MATH 215 or 241 or 251A.

ICS 210 Information Systems in Society (3)

Lecture/discussion critically explores sociopolitical dimensions of Information and Communication Technology (ICT), and the information professions. A-F only. Pre: departmental approval. (Once a year)

ICS 211 Introduction to Computer Science II (4)

(3 Lec, 1 3-hr. Lab) Reinforce and strengthen problemsolving skills using abstract data types and introduce software development practices. Emphasize the use of searching and sorting algorithms and their complexity, recursion, object-oriented programming, and data structures. Pre: 111 or consent.

ICS 211A Introduction to Computer Science II (4)

(3 Lec, 1 3-hr. Lab) Reinforce and strengthen problem-solving skills using abstract data types and introduce software development practices. Emphasize the use of searching and sorting algorithms and their complexity, recursion, object-oriented programming, and data structures. Pre: grade of “B” or higher in 111 or consent.

ICS 212 Program Structure (3)

Program organization paradigms, programming environments, implementation of a module from specifications, the C and C++ programming languages. Pre: 211 or consent.

ICS 215 Introduction to Scripting (3)

Introduction to scripting languages for the integration of applications and systems. Scripting in operating systems, web pages, server-side application integration, regular expressions, and event handling for languages such as Perl, JavaScript, PHP, Python, shell scripting. A-F only. Pre: 211 (or concurrent), or consent. (Once a year)

ICS 222 Basic Concepts of Computer Science (3)

What is the subject of computer science? What is a computer? Understand the basic models of computation and the concepts of computability, complexity, and network computation, and learn to use them in practice. A-F only. Pre: 141 (or concurrent).

ICS 235 Machine Learning Methods (3)

Introduction to contemporary mathematical methods for empirical inference, data modeling, and machine learning. A-F only. Pre: MATH 241, MATH 203, MATH 215, or MATH 251A. (Fall only) (Cross-listed as DATA 235)

ICS 241 Discrete Mathematics for Computer Science II (3)

Includes program correctness, recurrence relations and their solutions, relations and their properties, divide and conquer relations, graph theory, trees and their applications, Boolean algebra, introduction to formal languages and automata theory. Pre: 141 or consent.

ICS 290 Computer Science Careers: An Exploration of the Specialties of Computer Science (1)

Exploration of the specialties of computer science. Meets every two week for 2.5 hours to explore specific areas in computer science. CR/NC only. (Once a year)

ICS 296 Sophomore Project (1)

Part of a multi-year project-based courses sequence where students will work in teams on acquiring experience in a beginner-level design of a software project expected to be continued in ICS 396. CS majors only. A-F only. Pre: 111.

ICS 311 Algorithms (4)

(4 1-hr Lec) Design and correctness of algorithms, including divide-and-conquer, greedy and dynamic programming methods. Complexity
analyses using recurrence relations, probabilistic methods, and NP-completeness. Applications to order statistics, disjoint sets, B-trees and balanced trees, graphs, network flows, and string matching. Pre: 211, and [(241 or EE 362) and (MATH 216 or 242 or 252A)] or (MATH 301 and 372); or consent.

ICS 312 Machine-Level and Systems Programming (3)

Machine organization, machine instructions, addressing modes, assembler language, subroutine linkage, linking to higher-level languages, interface to operating systems, introduction to assemblers, loaders and compilers. Pre: 212 (or concurrent), (311 or EE 367), and 314, or consent.

ICS 313 Programming Language Theory (3)

Syntax, semantics, control structures, variable binding and scopes, data and control abstractions. Programming in functional (LISP) and logic (Prolog) programming styles. Pre: Pre: 212, (311 or EE 367), and 314, or consent.

ICS 314 Software Engineering I (3)

Problem analysis and design, team-oriented development, quality assurance, configuration management, project planning. These topics are covered in the sequence 314-414. Pre: 211, and 241 or (MATH 301 and 372), or consent.

ICS 321 Database Systems I (3)

Introduction to relational database systems, data modeling, query processing, transaction processing, storage, and indexing. Pre: (311 or EE 367) and 314, or consent.

ICS 331 Logic Design and Microprocessors (4)

(1 3-hr Lab) Basic machine architecture, microprocessors, bus organization, circuit elements, logic circuit analysis and design, microcomputer system design. Pre: 212, (311 or EE 367), and 314; or consent.

ICS 332 Operating Systems (3)

Operating system concepts and structure, processes and threads, CPU scheduling, memory management, scheduling, file systems, inter-process communication, virtualization, popular operating systems. A-F only. Pre: (311 or EE 367) and 314.

ICS 351 Network Design and Management (3)

Overview of the internet and its capabilities; introduction to HTTP, TCP/IP, ethernet, and wireless 802.11; routers, switches, and NAT; network and wireless security; practical experience in designing and implementing networks. Pre: (311 or EE 367) and 314, or consent. (Once a year)

ICS 355 Security and Trust I: Resource Protections (3)

Security and trust in computers, networks, and society. Security models. Access and authorization. Availability and Denial-of-Service. Trust processes and network interactions. Pre: 241 or (MATH 301 and 372).

ICS 361 Introduction to Artificial Intelligence Programming (3)

Introduction to the theory of Artificial Intelligence and the practical application of AI techniques in Functional (Common LISP and/or Scheme) and Logic (Prolog) programming languages. Students gain practical experience through programming assignments and projects. A-F only. Pre: (212 or 215) and (311 or EE 367) and 314, or consent.

ICS 369 Computational Media Systems (3)

Intermediate object-oriented programming within the context of interactive media systems and video game development. Topics: classes, objects, inheritance, polymorphism, abstract classes, interfaces, event-driven programming, vectors, geometric primitives, game mechanics, and relevant design patterns. EE, CENG, ICS, CM, THEA, DNCE majors only. A-F only. Pre: 111 or EE 160 or instructor approval. (Cross-listed as EE 369)

ICS 390 Computing Ethics for Lab Assistants (3)

A lecture/discussion/internship on ethical issues and instructional techniques for students assisting a laboratory section of ICS 101. The class uses multiple significant writing and oral presentation activities to help students learn course content. Pre: consent.

ICS 396 Junior Project (2)

Part of a multi-year project-based courses sequence where students will work in teams on acquiring experience in intermediate-level design, implementation and presentation of a software project that may have been initiated in ICS 296. CS majors only. A-F only. Pre: 314 or concurrent.

ICS 414 Software Engineering II (3)

Continuation of 314. Project management, quality, and productivity control, testing and validation, team management. Team-oriented software-implementation project. Pre: (311 or EE 367) and 314.

ICS 415 Introduction to Programming for the Web (3)

Introduction to emerging technologies for construction of World Wide Web (WWW)-based software. Covers programming and scripting languages used for the creation of WWW sites and client-server programming. Students will complete a medium-sized software project that uses languages and concepts discussed in class. Pre: (311 or EE 367) and 314, or consent.

ICS 419 The Science, Psychology and Philosophy of Systems Design (3)

Scientific, psychological and philosophical bases of systems design, including a survey of human-factors and ergonomic standards; the nature of innovation and creativity as it relates to systems design. Web-enhanced course. Pre: (311 or EE 367) and 314, or consent. (Once a year)

ICS 421 Database Systems II (3)

Very large database systems, data integration, data warehousing, designing big data systems, parallel query processing, distributed transactions. Pre: 321 or consent.

ICS 422 Network Science Methodology (3)

Computational and statistical methods for analyzing network models of social, technological, information, and biological networks. Introduction to relevant data analytics and graph analysis software packages. Pre: (311 or EE 367) or consent. (Cross-listed as DATA 422)

ICS 423 Data Security and Cryptography I (3)

Secret communication and confidentiality data storage. Elements of cryptography and cryptanalysis. Classical ciphers. Symmetric key cryptography. Public key cryptography. Data security in cyber space. Pre: 222 and 355.

ICS 424 Application Frameworks (3)

Experience producing applications with at least two different applications frameworks. A-F only. Pre: (311 or EE 367) and 314, or consent.

ICS 425 Computer Security and Ethics (3)

Theoretical results, security policy, encryption, key management, digital signatures, certificates, passwords. Ethics: privacy, computer crime, professional ethics. Effects of the computer revolution on society. A-F only. Pre: 355 or consent. (Once a year)

ICS 426 Computer System Security (3)

Information flow, confinement, information assurance, malicious programs, vulnerability analysis, network security, writing secure programs. A-F only. Pre: 355 or consent. (Once a year)

ICS 427 Programming Approaches to Software Quality Assurance (3)

Examination of best practices associated with developing and supporting software
applications with respect to potential security risks. Will augment software engineering practices learned in other courses with the basic principles of cybersecurity. Pre: 314 or consent.

ICS 428 Digital Forensics (3)

Provides students with the knowledge of underlying principles and skills to identify, preserve, and extract electronic evidence for further analysis. Pre: 355 or consent.

ICS 431 Computer Architecture (3)

Memory management, control flow, interrupt mechanisms, multiprocessor systems, special-purpose devices. Pre: 331 or EE 361/361L.

ICS 432 Concurrent and High-Performance Programming (3)

Principles of concurrent and high performance programming. Multi-threading in C and Java for shared-memory programming. Distributed memory programming with Java. Introduction to cluster computing. A-F only. Pre: 212 and 322 and (311 or EE 367) and 314, or consent. (Once a year)

ICS 434 Data Science Fundamentals (3)

Introduction to critical statistical and probabilistic concepts that underlie data science as well as tools that play a central role in the daily work of a data scientist. A-F only. Pre: 211 or consent. (Cross-listed as DATA 434)

ICS 435 Machine Learning Fundamentals (3)

Introduction to machine learning concepts with a focus on relevant ideas from computational neuroscience. Information processing and learning in the nervous system. Neural networks. Supervised and unsupervised learning. Basics of statistical learning theory. Pre: 235, or consent. Recommended: MATH 307. (Once a year) (Cross-listed as DATA 435)

ICS 438 Big Data Analytics (3)

Concepts, tools, and techniques for analyzing and mining massive data sets. Data cleaning and pre-processing. Data analysis and mining techniques. Big Data platforms. Big Data visualization. Pre: 321.

ICS 441 Theory of Computation (3)

Grammars, sequential machines, equivalence, minimalization, analysis and synthesis, regular expressions, computability, unsolvability, Gödel’s theorem, Turing machines. Pre: (311 or EE 367) and 314, or consent.

ICS 442 Analytical Models and Methods (3)

Applications of mathematical methods in computer science with emphasis on discrete mathematics, numerical computation, algebraic models, operations research. Pre: (311 or EE 367) and 314, or consent.

ICS 443 Parallel Algorithms (3)

Introduction to parallel models of computation and design and analysis of parallel algorithms. Pre: (311 or EE 367) and 314. (Fall only)

ICS 451 Data Networks (3)

Network analysis, architecture, digital signal analysis and design; circuit switching, packet switching, packet broadcasting; protocols and standards; local area networks; satellite networks; ALOHA channels; examples. Pre: 212 and (311 or EE 367) and 314, or consent.

ICS 452 Software Design for Robotics (3)

Sensors, actuators, signal processing, paradigms of robotic software design, introduction to machine learning, introduction to computer vision, and robot-to-human interaction. A-F only. Pre: two ICS 300-level courses or consent. Recommended: 312 and 313. (Once a year: spring)

ICS 455 Security and Trust II: Information Assurance (3)

Channel security. Trojan and noninterference. Basic concepts of cryptology. Cryptographic primitives. Protocols for authentication and key establishment. Pre: 222 and 355.

ICS 461 Artificial Intelligence (3)

Survey of artificial intelligence: natural language processing, vision and robotics, expert systems. Emphasis on fundamental
concepts: search, planning, and problem solving, logic, knowledge representation. Pre: (311 or EE 367) or consent.

ICS 462 Artificial Intelligence for Games (3)

Techniques to stimulate intelligence in video games: movement, pathfinding with A* search, decision/behavior trees, state machines, machine learning, tactics. Extend games with your own AI implementations; experience “shootout” contests for the best AI algorithm/implementation. Pre: 212 and (311 or EE 367) and 314 and (PHYS 151 or PHYS 170). (Alt. years)

ICS 464 Human Computer Interaction I (3)

Application of concepts and methodologies of human factors, psychology and software engineering to address ergonomic, cognitive, and social factors in the design and evaluation of human-computer systems. Pre: (311 or EE 367) and 314, or consent.

ICS 465 Introduction to Hypermedia (3)

Basic issues of interactive access to information in various formats on computers. Available hardware and software: editing, integration, programming. Implementation of a sample information system. Pre: (311 or EE 367) and 314.

ICS 466 Design for Mobile Devices (3)

Lecture introducing design issues, programming languages, operating systems and mark-up languages for internet-enabled mobile devices, such as cell phones and PDAs. A-F or Audit. Pre: (311 or EE 367) and 314, or consent. (Spring only)

ICS 469 Cognitive Science (3)

Introduces basic concepts, central problems, and methods from cognitive science. Identifies contributions from disciplines such as cognitive psychology, linguistics, artificial intelligence, philosophy, and neuroscience. Pre: (311 or EE 367) and 314, or consent.

ICS 471 Probability, Statistics, and Queuing (3)

A hands-on introduction to probability, statistical inference, regression, Markov chains, queuing theory. Use of an interactive statistical graphics environment such as R. Pre: (311 or EE 367) and 314, or consent.

ICS 475 Introduction to Bioinformatics Sequences and Genomes Analysis (3)

Introduction to bioinformatics to computer sciences students by focusing on how computer sciences techniques can be used for the storage, analysis, prediction and simulation of biological sequences (DNA, RNA and proteins). A-F only. Pre: (311 or EE 367) and 314, or consent. (Once a year)

ICS 476 Bioinformatics Algorithms and Tool Development (3)

Study of commonly used bioinformatic algorithms, with an emphasis on string, tree, and graph algorithms. Presentation of probabilistic and clustering methods. Implementation of the studied algorithms and design of applications. Pre: 475 or consent. (Once a year)

ICS 481 Introduction to Computer Graphics (3)

Fundamentals of computer graphics including graphics hardware, representation, manipulation, and display of two- and three-dimensional objects, use of commercial software. Pre: (MATH 216, MATH 242, or MATH 252A) and (311 or EE 367) and 314; or consent.

ICS 483 Computer Vision (3)

Introductory course in computer vision. Topics include image formation, image processing and filtering, edge detection, texture analysis and synthesis, binocular stereo, segmentation, tracking, object recognition and applications. A-F only. Pre: 212 and (311 or EE 367) and 314, or consent. Once a year.

ICS 484 Data Visualization (3)

Introduction to data visualization through practical techniques for turning data into images to produce insight. Topics include: information visualization, geospatial visualization, scientific visualization, social network visualization, and medical visualization. Junior standing or higher. Pre: 110(Alpha) or 111 or CINE/ACM 215. (Cross-listed as CINE/ACM 484 and DATA 484)

ICS 485 Video Game Design and Development (3)

Students will team design, build, and demonstrate video games or related interactive entertainment environments and applications. Topics will include emerging computer science techniques relevant to the development of these types of environments. Junior standing or higher. Pre: any 110(Alpha) or 111 or CINE/ACM 215. (Cross-listed as CINE/ACM 487)

ICS 486 Virtual and Augmented Reality Programming (3)

Students will learn to develop virtual reality and augmented reality applications with
turnkey tools as well as through programming. Prior programming experience is not required for this course. Pre: any 110(Alpha) or 111 or CINE/ACM 215. (Cross-listed as CINE/ACM 419).

ICS 491 Special Topics (3)

Reflects special interests of faculty. Oriented toward juniors and seniors. Repeatable one time for BS/CS students. Pre: at least two 300-level ICS classes or consent.

ICS 495 Special Topics in Security (3)

Special topics in security oriented toward juniors and seniors. Repeatable unlimited times. Pre: at least two 300-level ICS courses or consent.

ICS 496 Capstone Project (3)

Project-based course where students work in teams on a software project. Knowledge acquired in the computer science curriculum will be applied to design and implement a software product with potential real-world applicability. Repeatable one time. CS majors only. Senior standing or higher. A-F only. Pre: (311 or EE 367) and 314.

ICS 499 Computer Project (V)

Individual or small group projects in system design or application under faculty supervision. Pre: consent.

ICS 606 Intelligent Autonomous Agents (3)

Theory, methods and practical applications of autonomous agent systems, including common applications of both software and hardware (robotic) agents. In-depth practical experience with autonomous agents through programming assignments and projects. Pre: 313 or EE 467 (or equivalent), graduate standing; or consent. (Once a year) (Cross-listed as EE 606)

ICS 611 Compiler Theory and Construction (3)

Design and implementation of compilers, syntactic and semantic descriptions of programming languages, algorithms for syntactic analysis and object code generation. Pre: 312 or consent.

ICS 612 Theory of Operating Systems (3)

Advanced study in operating systems theory and design with emphasis on case studies and distributed systems.

ICS 613 Advanced Software Engineering (3)

Fundamental software engineering procedures, including planning, estimation, design, testing, process definition and improvement, and software quality assurance. Measurement techniques are used to support empirically-driven software process improvement throughout the course. Pre: graduate standing, or consent.

ICS 614 Medical Informatics I (3)

Introduction to the field of medical informatics, which is found at the intersection of clinical science, public health, information science, computer technology and communications technology. Concentration on current issues. Pre: consent.

ICS 616 Information Architecture and Web Design (3)

User-centered design of websites; survey Information Architecture (IA) systems (organization, navigation, labeling, searching); gain experience in methodologies for creating IA, tools for IA, web standards and usability tests. ICS and LIS majors only. A-F only. Pre: graduate standing in ICS or LIS or related field or consent. (Once a year)

ICS 621 Analysis of Algorithms (3)

Analysis and design of algorithms: modeling, comparison, measures, applications. Pre: graduate standing, or consent.

ICS 622 Network Science (3)

Modeling human-made and natural systems as networks to understand their structure and dynamics. Computational and statistical methods and research results they enabled. Use of network analysis software. Applications to topics of interest to students.

ICS 623 Advanced Cryptography (3)

Taxonomy of security properties: methods for defining and proving security. Randomness, pseudorandomness, and indistinguishability. Functional encryption and obfuscation. Zero knowledge. Pre: graduate standing, or consent.

ICS 624 Advanced Data Management (3)

Exploration of information retrieval and object-relational tools and methods for the management of distributed multimedia database systems. Pre: graduate standing, or consent.

ICS 632 Principles of High Performance Computing (3)

Principles of high performance computing for single-processor and parallel architectures. Detailed coverage of parallel architectures and exposure to shared-memory, distributed-memory, and hybrid parallelism. Hands-on experience with message-passing and multithreaded programming. A-F only. Pre: graduate standing in computer science or closely related field, or consent. (Once a year)

ICS 635 Machine Learning (3)

Introduction to key theoretical concepts of machine learning. Practical experience with decision free methods, artificial neural networks. Bayesian belief networks and contemporary statistical methods including regression, clustering and classification. Pre: consent. (Once a year)

ICS 636 Information Theory in Machine Learning (3)

Basics of information processing and learning in the brain; neural networks; learning algorithms based on information maximization; applications in molecular biology and bioinformatics. A-F only. Pre: graduate standing in computer science or mathematics background, or consent. (Once a year)

ICS 637 Deep Learning with Neural Networks (3)

Graduate course on deep learning with artificial neural networks. Provides practical techniques for modeling image, video, text, and graph data with supervised, unsupervised, and reinforcement learning approaches. Includes instruction in the latest software frameworks. Graduate students only. Pre: 635 (or concurrent) or consent.

ICS 641 Advanced Theory of Computation (3)

Advanced topics in formal languages, automata, computability, computational complexity. Pre: 441 or consent.

ICS 643 Advanced Parallel Algorithms (3)

Design and analysis of parallel algorithms, with emphasis on advanced techniques and latest advances in parallel algorithms. Pre: graduate standing, or consent.

ICS 651 Computer Networks (3)

Elementary principles of modern computer networking. Detailed coverage of overall architecture and the physical, data link, and network layers, with emphasis on the network layer. ICS majos only. Pre: graduate standing in ICS, or consent.

ICS 655 Security and Trust III: Cyber Security and Commerce (3)

Tools and methods for security managers. Tools and methods to secure and monetize services and applications. Network as a computer and as a market. Problems of cyber war, cyber crime, cyber bullying. Graduate students only. (Spring only)

ICS 660 Computer Architecture I (3)

Models of computation, high-performance processors, pipelined machines, RISC processors, VLIW, superscalar and fine-grain parallel machines. Data-flow architectures. Hardware/software tradeoffs. Pre: EE 461. (Cross-listed as EE 660)

ICS 661 Advanced Artificial Intelligence (3)

Current issues in artificial intelligence, including expert systems, knowledge representation, logic programming, learning, natural language processing. Pre: graduate standing, or consent.

ICS 663 Pattern Recognition (3)

Nature of the problem in pattern recognition and clustering; explanation of various algorithms. Pre: graduate standing, or consent.

ICS 664 Human-Computer Interaction II (3)

Studies of human performance in designing and using information systems. Emphasizes concepts and methodologies from human factors, psychology, and software engineering relating to human performance. Pre: graduate standing, or consent.

ICS 665 User Interfaces and Hypermedia (3)

Advanced concepts in construction of interfaces between computers and their users. Hypermedia information structures, guidelines, problems, and tradeoffs. Discussion of selected readings, implementation of prototypes. Pre: 465 or consent.

ICS 667 HCI Design Methods (3)

Advanced analytical and empirical methods for the design and evaluation of usable, useful, and robust human computer interfaces. Students will apply selected methodologies to a major system design project. Pre: 464 or 465, or consent.

ICS 668 Social Informatics (3)

An advanced introduction to the design of human-computer systems and other technological artifacts for supporting human collaboration in learning, work and social contexts, and to theoretical perspectives and empirical studies of collaboration that inform such design. A-F only. Pre: 464 or 465 or 664 or 665 or 667 or LIS 677; or consent.

ICS 669 Social Computing (3)

Participative analysis of online communities and user-generated content collections. Theoretical and practical aspects of online interaction, identity, trust, and virtual social capital. A-F only. (Once a year)

ICS 674 Evolutionary Computation I: Survey of Methods (3)

Evolutionary computation surveys in the field to prepare students for research. Topics include diverse engineering applications, theory, and concepts including search spaces, representation, objective functions, variation operators, selection, and population based search. Pre: 211 (B or better) and 241 (C or better) and admitted to a graduate program or capable of graduate-level work in computer sciences, or consent. (Once a year: fall)

ICS 675 Bioinformatics: Sequences Analysis (3)

To expose students to bioinformatics at the biological sequences analysis level (DNA, RNA, proteins). Several bioinformatics methods and algorithms are introduced. Students are required to present one paper and to participate in a small group project. A-F only. . Pre: graduate standing, or consent. (Once a year)

ICS 676 Bioinformatics: Microarrays (3)

Introduction to the basic principles of biology relevant for microarray gene expression data and to Bio-conductor. Collaborative open-source project to develop a modular general framework for the analysis of cDNA arrays and gene chips. A-F only. Pre: 311 or background in biology, or consent. (Once a year)

ICS 681 Computer Graphics (3)

Selected advanced topics in computer graphics. Substantial project required. Pre: 481 or consent.

ICS 682 Numerical Computation (3)

Selected topics in numerical analysis, mathematical software, and scientific computation; examples include sparse matrix methods, finite element methods, mathematical programming. Pre: consent.

ICS 683 Advanced Computer Vision (3)

Fundamental problems and core concepts and techniques in computer vision, covering both theoretical and practical issues in the field. A-F only. Pre: graduate standing, or consent. (Once a year)

ICS 684 Advanced Data Visualization (3)

Explores advanced techniques in data visualization by surveying visualization techniques from the past 5-10 years, and designing and developing data visualizations leveraging those techniques. Graduate students only. (Fall only)

ICS 685 Virtual and Augmented Reality (3)

Students will learn the science, engineering, art, and applications of virtual reality and augmented reality, with an emphasis on the construction of working virtual environments. Graduate students only. (Fall only)

ICS 686 Digital Video Information (3)

Principles and techniques of technical and context analysis of digital video information. Video capture and editing tools, compression and analysis algorithms, visual culture, narrative structure, juxtaposition of multimedia elements and their effects on information transmission. Pre: graduate standing or consent. (Alt. years)

ICS 690 Seminar in ICS (1)

Series of talks on advanced research topics. Repeatable unlimited times. CR/NC only.

ICS 691 (Alpha) Topics in Computer Science (3)

Reflects special interests of faculty in various areas of computer science. (B) area 1; (C) area 2; (D) area 3; (E) area 4; (G) general. Repeatable unlimited times in different topics and different areas. Pre: consent.

ICS 692 Special Topics Seminar (V)

Seminar discussing special topics in information and computer science. Topics and number of credits vary. Repeatable unlimited times.

ICS 695 Advanced Special Topics in Security (3)

Current topics and upcoming issues relevant to the field of information assurance and cyber security. Repeatable unlimited times. (Alt. years: spring)

ICS 699 Directed Reading/Research (V)

Repeatable unlimited times. Pre: graduate standing and consent.

ICS 700 Thesis Research (V)

Research for master’s thesis. Repeatable unlimited times.

ICS 800 Dissertation Research (V)

Research for doctoral dissertation. Repeatable eight times. Pre: candidacy for PhD in computer science.

LIS 636 Responding to Reading in Libraries (3)

Research-intensive seminar that explores the reading process in library contexts and similar settings. Critical examination of ways in which library and literacy services impact reading engagement and interests of library users. LIS majors only. Graduate students only.

LIS 659 Archival Access, Representation and Use (3)

Principles and techniques for arrangement and description of archival materials. Topics include basic metadata standards, authority sources, record context, series identification, scope, and content. LIS majors only. Graduate students only. Pre: 654.

LIS 692 Masters Seminar II (2)

Seminar for graduating students focused on the refinement and completion of the culminating portfolio or thesis. Peer mentoring, faculty, and student presentations. MLISc degree required course. Graduate students only. CR/NC only. Pre: 691.

MATH 100 Survey of Mathematics (3)

Selected topics designed to acquaint nonspecialists with examples of mathematical reasoning. May not be taken for credit after 215 or higher.

MATH 111 Math for Elementary Teachers I (3)

Understanding, communicating, and representing mathematical ideas, problem solving, and reasoning. Number systems, place value, fractions, and properties of operations. Prospective elementary education majors only.

MATH 112 Math for Elementary Teachers II (3)

Understanding, communicating, and representing mathematical ideas; problem solving; reasoning and proof; and using symbolism. Patterns and algebraic thinking, place value and decimals, geometry, and mathematical modeling. Pre: 111.

MATH 134 Precalculus: Elementary Functions (2)

Algebra review, functions with special attention to polynomial, rational exponential and logarithmic functions, composed and inverse functions, techniques of graphing. Credit not allowed for 134 and 140, or 134 and 161. Pre: two years of high school algebra, one year of plane geometry.

MATH 140 Precalculus: Trigonometry and Analytic Geometry (3)

Studies trigonometric functions, analytic geometry, polar coordinates, vectors, and related topics. This course is the second part of the precalculus sequence. Credit allowed for one of 134, 135, or 140. Pre: 134, 135, or 161 or assessment exam.

MATH 161 Precalculus and Elements of Calculus for Economics and the Social Sciences (3)

Algebra review, functions with special attention to polynomial, rational, exponential, and logarithmic functions, algebra of functions, techniques of graphing, differentiation and integration of algebraic functions, applications in economics and social sciences. Credit allowed for only one of 134, 135, or 161. A-F only.

MATH 190 Introduction to Programming (2)

(3 hr) Introduction to numerical algorithms and structured programming using Fortran, MATLAB, or other appropriate language. Pre: one semester of calculus (203, 215, 241, 242, 243, 244, 251A, 252A, or 253A) (or concurrent), or consent.

MATH 203 Calculus for Business and Social Sciences (3)

Basic concepts; differentiation and integration applications to management, finance, economics, and the social sciences. Credit allowed for at most one of 203, 215, 241, 251A. Pre: 134, 135, or 161, or assessment exam.

MATH 215 Applied Calculus I (4)

Basic concepts; differentiation, differential equations and integration with applications directed primarily to the life sciences. Credit allowed for at most one of 203, 215, 241, 251A. Pre: 140 or assessment exam.

MATH 216 Applied Calculus II (3)

Differential calculus for functions in several variables and curves, systems of ordinary differential equations, series approximation of functions, continuous probability, exposure to use of calculus in the literature. Pre: 215 or consent.

MATH 241 Calculus I (4)

Basic concepts; differentiation with applications; integration. Credit allowed for at most one of 203, 215, 241, 251A. Pre: 140 or 215 or assessment exam.

MATH 242 Calculus II (4)

Integration techniques and applications, series and approximations, differential equations. Pre: 241 or 251A or a grade of B or better in 215; or consent.

MATH 243 Calculus III (3)

Vector algebra, vector-valued functions, differentiation in several variables, and optimization. Pre: 242 or 252A, or consent.

MATH 244 Calculus IV (3)

Multiple integrals; line integrals and Green’s Theorem; surface integrals, Stokes’s and Gauss’s Theorems. Pre: 243 or consent.

MATH 251A Accelerated Calculus I (4)

Basic concepts; differentiation with applications; integration. Compared to 241, topics are discussed in greater depth. Credit allowed for at most one of 203, 215, 241, 251A. Pre: assessment and consent, or a grade of A in 140 and consent.

MATH 252A Accelerated Calculus II (4)

Integration techniques and applications, series and approximations, differential equations, introduction to vectors. Pre: 251A (with a minimum grade of B) or 241 (with a minimum grade of A and consent).

MATH 253A Accelerated Calculus III (4)

Vector calculus; maxima and minima in several variables; multiple integrals; line integrals, surface integrals and their applications. Pre: 252A.

MATH 257 History of Mathematics (3)

The historical development of mathematical thought. Pre: 216 or 242 or 252A.

MATH 301 Introduction to Discrete Mathematics (3)

Symbolic logic, sets and relations, algorithms, trees and other graphs. Additional topics chosen from algebraic systems, networks, automata. Pre: one semester of calculus from mathematics department; or consent. Recommended: one semester programming.

MATH 302 Introduction to Differential Equations I (3)

First order ordinary differential equations, constant coefficient linear equations, oscillations, Laplace transform, convolution, Green’s function. Pre: 216 or 243 (or concurrent) or 253A (or concurrent), or consent.

MATH 303 Introduction to Differential Equations II (3)

Constant coefficient linear systems, variable coefficient ordinary differential equations, series solutions and special functions, Fourier series, partial differential equations. Pre: 302, 311 (or concurrent); or consent.

MATH 304 Mathematical Modeling: Deterministic Models (3)

Deterministic mathematical modeling emphasizing models and tools used in the biological sciences. Topics include difference equations, qualitative behavior solutions of ODEs and reaction-diffusion equations. A computer lab may be taken concurrently. Pre: 216 or 242 or 252A, or consent.

MATH 304L Mathematical Modeling: Deterministic Models Lab (1)

Optional laboratory for 304. Pre: 304 (or concurrent).

MATH 305 Mathematical Modeling: Probabilistic Models (3)

Probabilistic mathematical modeling emphasizing models and tools used in the biological sciences. Topics include stochastic and Poisson processes, Markov models, estimation, and Monte Carlo simulation. A computer lab may be taken concurrently. Pre: 216 or 242 or 252A, or consent.

MATH 305L Mathematical Modeling: Probabilistic Models Lab (1)

Optional laboratory for 305. Pre: 305 (or concurrent).

MATH 307 Linear Algebra and Differential Equations (3)

Introduction to linear algebra, application of eigenvalue techniques to the solution of differential equations. Students may receive credit for only one of 307 or 311. Pre: 242 or 252A, or consent.

MATH 311 Introduction to Linear Algebra (3)

Algebra of matrices, linear equations, real vector spaces and transformations. Emphasis on concepts and abstraction and instruction of careful writing. Students may receive credit for only one of 307 or 311. Pre: 242 or 252A, or consent.

MATH 321 Introduction to Advanced Mathematics (3)

Formal introduction to the concepts of logic, finite and infinite sets, functions, methods of proof and axiomatic systems. Learning mathematical expressions in writing is an integral part of the course. Pre: 243 (or concurrent) or 253A (or concurrent), or consent.

MATH 331 Introduction to Real Analysis (3)

A rigorous axiomatic development of one variable calculus. Completeness, topology of the line, limits, continuity, differentiation, integration. Emphasis on teaching mathematical writing. Pre: 242 or 252A, and 321; or consent.

MATH 351 Foundation of Euclidean Geometry (3)

Axiomatic Euclidean geometry and introduction to the axiomatic method. Pre: 243 or 253A, and 321 (or concurrent); or consent.

MATH 352 Non-Euclidean Geometries (3)

Hyperbolic, other non-Euclidean geometries. Pre: 351 or consent.

MATH 353 Introduction to Euclidean and NonEuclidean Geometries (3)

Axiomatic geometry and introduction to the axiomatic method; Euclidean geometry; hyperbolic geometry, and other nonEuclidean geometries. Pre: 243 or 253A, and 321 (or concurrent); or consent. (Fall only)

MATH 370 Financial Mathematics (3)

Interest rate measurement, valuation of annuities, loan repayment, bond valuation, rate of return. Term structure of interest rates, cashflow duration, and immunization. Financial mathematics actuarial exam topics. Pre: 216 or 242 or 252A or (203 and BUS 250). (Alt. years: fall)

MATH 371 Elementary Probability Theory (3)

Sets, discrete sample spaces, problems in combinatorial probability, random variables, mathematical expectations, classical distributions, applications. Pre: 216, 242, or 252A; or consent.

MATH 372 Elementary Probability and Statistics (3)

Problem-oriented introduction to the basic concepts of probability and statistics, providing a foundation for applications and further study. Pre: 216 or 242 or 252A or consent.

MATH 373 Elementary Statistics (3)

Estimation, tests of significance, the concept of power. Pre: 371 or consent.

MATH 402 Partial Differential Equations I (3)

Integral surfaces and characteristics of first and second order partial differential equations. Applications to the equations of mathematical physics. Pre: 243 or 253A, or consent. Recommended: 244 and 302.

MATH 403 Partial Differential Equations II (3)

Laplace’s equation, Fourier transform methods for PDEs, higher dimensional PDEs, spherical harmonics, Laplace series, special functions and applications. Pre: 402 or consent.

MATH 405 Ordinary Differential Equations (3)

Systems of linear ordinary differential equations, autonomous systems, and stability theory applications. Optional topics include series solutions, Sturm theory, numerical methods. Pre: 302 and 311, or consent.

MATH 407 Numerical Analysis (3)

Numerical solution of equations, interpolation, least-squares approximation, quadrature, eigenvalue problems, numerical solution of ordinary and partial differential equations. (These topics are covered in the year sequence 407–408.) Pre: 243 or 253A, and 307 or 311, and one semester programming; or consent.

MATH 408 Numerical Analysis (3)

Continuation of 407. This is the second course of a year sequence and should be taken in the same academic year as 407. Pre: 407 or consent.

MATH 411 Linear Algebra (3)

Vector spaces over arbitrary fields, minimal polynomials, invariant subspaces, canonical forms of matrices; unitary and Hermitian matrices, quadratic forms. Pre: 307 or 311, and 321; or consent.

MATH 412 Introduction to Abstract Algebra (3)

Introduction to basic algebraic structures. Groups, finite groups, abelian groups, rings, integral domains, fields, factorization, polynomial rings, field extensions, quotient fields. Emphasis on writing instruction. (These topics are covered in the year sequence 412–413.) Pre: 311 and 321; or consent.

MATH 413 Introduction to Abstract Algebra (3)

Continuation of 412. This is the second course of a year sequence and should be taken in the same academic year as 412. Emphasis on writing instruction. Pre: 412 or consent.

MATH 414 Optimization: Theory & Methods (3)

Introduction to theory and methods for optimization. Topics may include least square analysis, search methods, conjugate direction methods, linear programming, integer programming, and constrained optimization. Pre: 243 or 253A, and 307 or 311; or consent.

MATH 420 Introduction to the Theory of Numbers (3)

Congruences, quadratic residues, arithmetic functions, distribution of primes. Emphasis is on teaching theory and writing, not on computation. Pre: 321 or consent.

MATH 421 Topology (3)

General topology, including compactness and connectedness; the Jordan Curve Theorem and the classification of surfaces; first homotopy or homology groups. Pre: 321 or consent.

MATH 431 Principles of Analysis I (3)

Topology of Rn , metric spaces, continuous functions, Riemann integration, sequences and series, uniform convergence, implicit function theorems, differentials and Jacobians. Emphasis on teaching mathematical writing. (These topics are covered in the year sequence 431–432.) Pre: 311, 321, and 331; or consent.

MATH 432 Principles of Analysis II (3)

Continuation of 431. This is the second course of a year sequence and should be taken in the same academic year as 431. Emphasis on writing instruction continues. Pre: 431 or consent.

MATH 442 Vector Analysis (3)

Vector operations, wedge product, differential forms, and smooth mappings. Theorems of Green, Stokes, and Gauss, both classically and in terms of forms. Applications to electromagnetism and mechanics. Pre: 244 or 253A, and 307 or 311, or consent.

MATH 443 Differential Geometry (3)

Properties and fundamental geometric invariants of curves and surfaces in space; applications to the physical sciences. Pre: 244 or 253A, and 311; or consent.

MATH 444 Complex Analysis (3)

Analytic functions, complex integration, introduction to conformal mapping. Pre: 244 or 253A; recommended 331; or consent.

MATH 449 Topics in Undergraduate Mathematics (3)

Advanced topics from various areas: algebra, number theory, analysis, and geometry. Repeatable unlimited times. Pre: consent.

MATH 454 Axiomatic Set Theory (3)

Sets, relations, ordinal arithmetic, cardinal arithmetic, axiomatic set theory, axiom of choice and the continuum hypothesis. Pre: 321 or graduate standing in a related field or consent.

MATH 455 Mathematical Logic (3)

A system of first order logic. Formal notions of well-formed formula, proof, and derivability. Semantic notions of model, truth, and validity. Completeness theorem. Pre: 321 or graduate standing in a related field or consent. Recommended: 454.

MATH 471 Probability (3)

Probability spaces, random variables, distributions, expectations, moment-generating and characteristic functions, limit theorems. Continuous probability emphasized. Pre: 244 (or concurrent) or 253A (or concurrent), or consent. Recommended: 305 or 371 or 372; or consent.

MATH 472 Statistical Inference (3)

Sampling and parameter estimation, tests of hypotheses, correlation, regression, analysis of variance, sequential analysis, rank order statistics. Pre: 471 or consent.

MATH 475 Combinatorial Mathematics (3)

Finite configurations. Topics may include counting methods, generating functions, graph theory, map coloring, block design, network flows, analysis of discrete algorithms. Pre: 311 or consent.

MATH 480 Senior Seminar (2)

Seminar for senior mathematics majors, including an introduction to methods of research. Significant portion of class time is dedicated to the instruction and critique of oral presentations. All students must give the equivalent of three presentations. CR/NC only. Pre: one 400-level mathematics course or consent.

MATH 490 Mathematical Biology Seminar (1)

Reports on research in mathematical biology, reviews of literature, and research presentation. Required for Certificate in Mathematical Biology. Repeatable one time. Pre: junior standing or higher and consent. (Cross-listed as BIOL 490)

MATH 499 Directed Reading (V)

Limited to advanced students who must arrange with an instructor before enrolling. Repeatable one time, up to six credits.

MATH 511 Problem Solving for Teachers (1)

Practicing teachers develop and improve their problem-solving skills by working on challenging mathematical tasks. Students improve their mathematics content knowledge by working on problems and learning to design challenge problems for their own classes. Practicing teachers in grades K-12 only. Repeatable unlimited times. CR/NC only. All 600-courses prerequisites graduate standing or consent.

MATH 600 (Alpha) Career Skills for Graduate Students in Mathematics (1)

Seminar addresses issues important in the career of a mathematician, beginning from their time in graduate school, through navigating the job market and on to their eventual work in industry or academia. (B) teaching. Repeatable unlimited times, repeatable one time for (B). MATH majors only.  Graduate students only.

MATH 601 Applied Dynamical Systems (3)

Continuous and discrete dynamical systems; bifurcation theory; chaotic maps. Additional topics from PDEs and linear algebra. Graduate students only.

MATH 602 Methods of Applied Mathematics (3)

Linear algebra, ordinary differential equations, and partial differential equations. Topics include spectral theory, matrix exponentiation, initial-value problems, dynamical systems, bifurcation theory, first-order PDEs,
characteristics, Sturm-Liouville theory, boundary-value problems, Green’s functions.

MATH 603 Partial Differential Equations (3)

Classical existence and uniqueness theory for PDEs, qualitative properties, classification, boundary value and initial value problems, fundamental solutions, other topics.

MATH 607 Numerical Analysis (3)

Numerical linear algebra including iterative methods, SVD, and other matrix factorizations, locating eigenvalues, discrete approximation to partial differential equations. Recommended: 407, 411, or consent.

MATH 610 Key Elements of Linear Algebra (1)

Key concepts of linear algebra for graduate students in mathematics. Specific topics include vector spaces, linear transformations, multilinear forms, and Jordan decomposition. May not receive credit for both MATH 411 and MATH 610. MATH majors only. Graduate students only.

MATH 611 Modern Algebra (3)

Modules, Sylow theorems, Jordan-Holder theorem, unique factorization domains, Galois theory, algebraic closures, transcendence bases. (These topics are covered in the year sequence 611–612.)

MATH 612 Modern Algebra (3)

Continuation of 611. This is the second course of a year sequence and should be taken in the same academic year as 611.

MATH 613 Group Theory (3)

Sylow theorems, solvable groups, nilpotent groups, extension theory, representation theory, additional topics.

MATH 615 Ring Theory (3)

Ideal theory in Noetherian rings, localization, Dedekind domains, the Jacobson radical, the Wedderburn-Artin theorem, additional topics.

MATH 618 Lattice Theory (3)

Introduction with applications to general algebra. Partially ordered sets, decomposition theory, representations of lattices, varieties and free lattices, coordinatization of modular lattices.

MATH 619 Universal Algebra (3)

Introduction to basic techniques, including subalgebras, congruences, automorphisms and endomorphisms, varieties of algebras, Mal’cev conditions.

MATH 620 Key Elements of Topology (1)

Key concepts of Topology for graduate students in mathematics; topological spaces; separation axioms, compactness, connectedness; continuity. MATH majors only. Graduate students only.

MATH 621 Topology (3)

Properties of topological spaces; separation axioms, compactness, connectedness; metrizability; convergence and continuity. Additional topics from general and algebraic topology. (These topics are covered in the year sequence 621–622.)

MATH 622 Topology (3)

Continuation of 621. This is the second course of a year sequence and should be taken in the same academic year as 621.

MATH 623 Geometric Group Theory (3)

Geometric, topological, and dynamical methods in the study of finitely generated infinite groups. Graduate students only. Pre: 621 (with a minimum grade of B-).

MATH 625 Differentiable Manifolds I (3)

Differentiable structures on manifolds, tensor fields, Frobenius theorem, exterior algebra, integration of forms, Poincare Lemma, Stoke’s theorem.

MATH 631 Theory of Functions of a Real Variable (3)

Lebesgue measure and integral, convergence of integrals, functions of bounded variation, Lebesgue-Stieltjes integral and more general theory of measure and integration. (These topics are covered in the year sequence 631–632.)

MATH 632 Theory of Functions of a Real Variable (3)

Continuation of 631. This is the second course of a year sequence and should be taken in the same academic year as 631.

MATH 633 Functional Analysis (3)

Linear topological spaces, normed spaces, Hilbert spaces, function algebras, operator theory. Pre: consent.

MATH 637 Calculus of Variations (3)

Simple variational problems, first and second variation formulas. Euler-Lagrange equation, direct methods, optimal control.

MATH 644 Analytic Function Theory (3)

Conformal mapping, residue theory, series and product developments, analytic continuation, special functions. (These topics are covered in the year sequence 644–645.)

MATH 645 Analytic Function Theory (3)

Continuation of 644. This is the second course of a year sequence and should be taken in the same academic year as 644.

MATH 649 (Alpha) Topics in Mathematics (3)

(B) logic; (D) analysis; (E) commutative rings; (F) function theory; (G) geometric topology; (H) operator theory; ((I) probability; (J) algebra; (K) special; (M) lattice theory and universal algebra; (N) noncommutative rings; (O) transformation groups; (P) partial differential equations; (Q) potential theory; (R) algebraic topology; (S) functional analysis; (T) number theory and combinatorics; (U) differentiable manifolds II. Repeatable up to nine credits for (U); unlimited times for the other alphas.

MATH 654 Introduction to Logic (3)

Model theory, computability theory, set theory. In particular syntax and semantics of first order logic; incompleteness, completeness, and compactness theorems; Loewenheim-Skolem theorems; computable and computably enumerable sets; axioms of set theory; ordinals and cardinals. Graduate students only.

MATH 655 Set Theory (3)

Axiomatic development, ordinal and cardinal numbers, recursion theorems, axiom of choice, continuum hypothesis, consistency and independence results.

MATH 657 Recursive Functions and Complexity (3)

Recursive, r.e., Ptime, and Logspace classes. Nondeterminism, parallelism, alternation, and Boolean circuits. Reducibility and completeness.

MATH 661 Introduction to Algebraic Number Theory (3)

Number fields and rings of integers; primes, factorization, and ramification theory; finiteness of the class group; Dirichlet’s Unit Theorem; valuations, completions, and local fields. Further topics. Graduate students only. Pre: 611 (with a minimum grade of B-).

MATH 671 Advanced Probability (3)

Independence and conditioning, martingales, ergodic theory, Markov chains, central limit theorem. A-F only. Pre: 631 (with a minimum grade of B) or consent. (Alt. years)

MATH 672 Stochastic Processes (3)

Stationary, Gaussian, and Markov processes. A-F only. Pre: 671 (with a minimum grade of B) or consent. (Alt. years)

MATH 681 Graph Theory (3)

Connected graphs and digraphs. Graph embeddings. Connectivity and networks. Factors and factorizations. Coverings. Coloring. Applications.

MATH 695 Directed Reading and Research for Plan B Masters Students (V)

Maximum of 3 credit hours. Repeatable two times. Graduate standing in MATH. A-F only.

MATH 699 Directed Reading and Research (V)

Maximum of 3 credit hours. Repeatable unlimited times.

MATH 700 Thesis Research (V)

Research for master’s thesis. Repeatable unlimited times. Pre: consent.

MATH 799 Apprenticeship in Teaching (V)

An experience-based introduction to college-level teaching; students serve as student teachers to professors; responsibilities include supervised teaching and participation in planning and evaluation. Open to graduate students in mathematics only. Repeatable one time, up to six credits. CR/NC only. Pre: graduate standing in mathematics and consent.

MATH 800 Dissertation Research (V)

Research for doctoral dissertation. Repeatable unlimited times.

MBIO 600 Kûlana Noi‘i: Introduction to Place-Based Methodologies in Hawai‘i (2)

Lectures, discussions, and service-learning organized to deepen understanding in: what is a research paradigm; how methods are developed in research designs; and new knowledge for place-based research. Marine Biology Graduate Program students only. A-F only.

MBIO 603 Career Skills for Marine Biologists (1)

Introduction to key professional skills including, but not limited to: grant writing, CV preparation, research logistics, data management, reproducible science, peer review, research ethics, publishing, career options, teaching, and professional presentations. MBIO majors only. A-F only. (Fall only)

MBIO 604 Current Research in Marine Biology (1)

Discussions with marine biology graduate faculty on current primary literature in marine biology. MBIO majors only. Graduate students only. A-F only. (Spring only)

MBIO 610 Mathematical Ecology of Marine Systems (3)

Introduction to a broad range of theories and techniques from mathematical ecology with an emphasis on marine systems. Students will learn to assess model assumptions, construct simple models, and apply analytical methods to describe system behavior. Graduate students in MB, ZOOL, BOT, and OCN programs only. A-F only. Pre: one semester of calculus.

MBIO 611 Introduction to Quantitative Methods in Fisheries Science (4)

(2 Lec, 1 3-hr Lab) Fisheries and population models including growth, stock-recruitment, surplus production, age-structured and size-based, parameter estimation, uncertainty characterization, resampling methods, and scientific computing. Graduate students only. A-F only. Pre: MATH 215 or 216, or MATH 241 or 242, or consent. (Alt. years)

MBIO 612 Data Science Fundamentals in R (3)

(3 hr Lec/Lab) Introduces project management, data analysis, and mathematical and statistical modeling using R as a platform. Students will learn principles and benefits of programming languages to apply skills to their own research. (Cross-listed as OCN 682)

MBIO 620 Behavioral Ecology of Coral Reef Fishes (3)

Introduction to processes that affect animal behavior and their significance. Exploring a broad range of techniques for studying behaviors of fishes, students will use new techniques in their own research. Graduate students in MB, ZOOL, BOT, and OCN programs only. A-F only.

MBIO 621 Respiratory Processes in Coral Reef Organisms (3)

Multidisciplinary course introduces the respiratory system of fishes and other reef taxa and its significance for ecology and behavior. Students will learn theory, principles, and hot to design/execute experiments for their own research. Graduate students in MB, ZOOL, BOT, and OCN programs only. A-F only.

MBIO 630 Remote Sensing Applications in Marine Science (3)

Introduction to tools for the discover, access, and application of remote sensing for their own research in marine biology, including best practices for data collection, synthesis, and project management. Graduate students in MB, ZOOL, BOT, and OCN programs only. A-F only.

MBIO 650 Marine Mammal Science and Conservation (3)

Will cover the most pressing conservation issues for marine mammals, and include a hands-on field component using traditional and novel techniques to inform their management. Graduate students in MB, ZOOL, BOT, and OCN programs only. A-F only.

MBIO 691(Alpha) Seminar in Marine Biology (1)

Marine biology topics, literature, and concepts of current interest within one of several active fields considered in detail; (B) general marine biology; (C) marine fisheries and natural resource management; (D) marine conservation biology; (E) marine education, outreach and policy; (F) marine physiology, behavior and organismal biology; (G) marine population biology and ecology; (H) marine community and ecosystem ecology; (I) professional development for marine biologists; (J) seminar at HIMB. Repeatable unlimited times. Graduate students only.

MBIO 699 Directed Research (V)

Directed research and reading in various fields of marine biology. Repeatable unlimited times. Graduate students only.

MBIO 700 Thesis Research (V)

Research for master’s thesis; (F) 1 credit. Repeatable unlimited times. Graduate students only. Satisfactory/ Unsatisfactory only.

MBIO 710 Topics in Marine Fisheries and Natural Resource Management (V)

Lecture, discussion, and/or projects on selected topics related to marine fisheries and natural resource management. Repeatable unlimited times. Graduate students only.

MBIO 715 Topics in Marine Conservation Biology (V)

Lecture, discussion, and/or projects on selected topics related to marine conservation biology. Repeatable unlimited times. Graduate students only.

MBIO 720 Topics in Marine Education, Outreach, and Policy (V)

Lecture, discussion, and/or projects on selected topics related to education, outreach, and policy of the marine environment. Repeatable unlimited times. Graduate students only.

MBIO 725 Topics in Marine Physiology, Behavior, and Organismal Biology (V)

Lecture, discussion, and/or projects on selected topics related to the physiology, behavior, and biology of marine organisms. Repeatable unlimited times. Graduate students only.

MBIO 740 Advanced Topics in Quantitative Biology (V)

Reflects faculty expertise and needs for graduate training in quantitative methods for biology, including statistical, computational, and analytic approaches. Format (lecture/lab/discussion) will vary by topic. Repeatable unlimited times. Graduate students only. A-F only.

MBIO 800 Dissertation Research (V)

Research for doctoral dissertation. Repeatable unlimited times. Graduate students only. Satisfactory/Unsatisfactory only.

MCB 275 Cell and Molecular Biology (3)

Integrated cell and molecular biology for life science majors. Modern advances in recombinant DNA technology. A-F only. Pre: C (not C-) or better in BIOL 171/171L and CHEM 272. (Cross-listed as BIOL 275)

MCB 314 Research Ethics (1)

Introduction to the ethical issues faced by individuals and institutions involved in scientific research. Based on case studies, students will discuss and write about ethical issues in research. Issues include humans and animals in research, mentoring, authorship, ownership of data, genetic technologies and record keeping. This course is designed for students with majors in the natural sciences. A-F only. Pre: BIOL 171 (or concurrent), or MATH 307 (or concurrent), or MATH 311 (or concurrent), or PHYS 170 (or concurrent), or CHEM 272 (or concurrent); or consent. (Cross-listed as MICR 314)

MCB 407 Molecular Cell Biology I (3)

Relationship between structure and function at macromolecular level. Pre: C (not C-) or better in BIOL 275/275L and CHEM 273, or consent. (Cross-listed as BIOL 407)

MCB 408 Molecular Cellular Biology II (3)

Cell structure and function. Structure, chemistry, and functions of organelles and macromolecules. Pre: C (not C-) or better in 407; or consent. (Cross-listed as BIOL 408 and MBBE 408)

MCB 408L Advanced Molecular and Cellular Biology Laboratory (2)

(2 3-hr Lab) A laboratory to accompany 407 and 408. Pre: BIOL 407 (or concurrent) or BIOL 408 (or concurrent). (Cross-listed as BIOL 408L)

MCB 461 Immunology (3)

Structure and biological actions of antigens and antibodies; fundamentals of antibody synthesis; the relation of immunology to biology and medical sciences. Pre: MICR 351 or BIOL 171; or consent. Recommended: BIOL 275/275L. (Cross-listed as MICR 461)

MCB 461L Immunology Lab (2)

(2 3-hr Lab) Basic exercises and experiments in immunology, immunochemistry, immuno-biology to illustrate principles of 461. Pre: 461 (or concurrent). (Cross-listed as MICR 461L)

MCB 472 The Biology of Cancer (3)

Integrative, in-depth focus on the genetics, cell biology, and molecular basis of cancer. Combination of classroom lectures and problem-based discussions in small groups. Addresses ethical implications of cancer research and treatment. A-F only. MCB or BIOL majors only. Senior standing or higher. Pre: BIOL 407 (or concurrent) and BIOL 408 (or concurrent) or consent. (Spring only) (Cross-listed as BIOL 472)

MCB 475 Bacterial Genetics (3)

Genetic analysis and molecular basis of transmission replication, mutation, and expression of heritable characteristics in prokaryotes. Pre: MICR 351 or BIOL 275, or consent. (Cross-listed as MICR 475)

MCB 475L Bacterial Genetics Lab (2)

(2 3-hr Lab) Techniques for study of transfer and expression of prokaryotic genes: transformation, conjugation, transposon mutagenesis, preparation and analysis of plasmid and chromosomal DNA. Pre: 475 (or concurrent). (Cross-listed as MICR 475L)

MICR 130 General Microbiology (3)

Role of microorganisms; how they affect people, property, and the environment. A basic survey course covering broad aspects of biochemistry, genetics, molecular biology, and physiology; host-parasite relationships, public health, bacterial, mycotic and viral diseases; epidemiology; ecology of soils and water; environmental pollution; food microbiology; industrial applications at an introductory level. Not open to those with credit in 351 or equivalent.

MICR 140A Microbiology Laboratory (2)

(2 2-hr Lab) Primarily for students in nursing and dental hygiene. Pre: 130 (or concurrent).

MICR 140L Microbiology Laboratory (2)

(2 2-hr Lab) Primarily for students in nursing and dental hygiene. Pre: 130 (or concurrent).

MICR 314 Research Ethics (1)

Introduction to the ethical issues faced by individuals and institutions involved in scientific research. Based on case studies, students will discuss and write about ethical issues in research. Issues include humans and animals in research, mentoring, authorship, ownership of data, genetic technologies and record keeping. This course is designed for students with majors in the natural sciences. A-F only. Pre: BIOL 171 (or concurrent), or MATH 307 (or concurrent), or MATH 311 (or concurrent), or PHYS 170 (or concurrent), or CHEM 272 (or concurrent); or consent. (Cross-listed as MCB 314)

MICR 351 Biology of Microorganisms (3)

Anatomy, chemistry, physiology, genetics, development, and environmental interactions of microorganisms. Pre: BIOL 171 or equivalent, CHEM 272/272L; or consent. Co-requisite: 351L. Recommended: BIOL 275/275L.

MICR 351L Biology of Microorganisms Lab (2

(2 3-hr Lab) Laboratory exercises to accompany 351. Pre: CHEM 272/272L, and BIOL 171, or equivalent. Co-requisite: 351.

MICR 361 Introductory Bioinformatics (4)

(3 Lec, 1 3-hr Lab) Introductory bioinformatics will provide a basic foundation of biological information (DNA, protein, genome and proteome) by using information technology (IT). A-F only. Pre: BIOL 275 and BIOL 275L, or consent. (Fall only)

MICR 401 Marine Microbiology (3)

Evolution, ecology, biochemistry, genetics and physiology of marine bacteria by examining defined systems and organisms. Pre: BIOL 265/265L and BIOL 275/275L and BIOL 301 (or concurrent)/301L (or concurrent), and OCN 201; or 351/351L; or consent.

MICR 401L Marine Microbiology Laboratory (1)

(1 3-hr Lab) Laboratory to accompany 401. Pre: BIOL 265/265L and BIOL 275/275L and BIOL 301 (or concurrent)/301L (or concurrent) and OCN 201; or 351/351L; and 401 (or concurrent); or consent.

MICR 431 Microbial Physiology (3)

Fundamental physiological and metabolic processes of bacteria; emphasis on growth, functions of cell structures, varieties of energy metabolism, metabolic regulation, and differentiation at the prokaryote level. Pre: 351.

MICR 431L Microbial Physiology Lab (2)

(2 3-hr Lab) Components and metabolism of the bacterial cell; emphasis on techniques of analysis of metabolism and molecular structure. Co-requisite: 431.

MICR 461 Immunology (3)

Structure and biological actions of antigens and antibodies; fundamentals of antibody synthesis; the relation of immunology to biology and medical sciences. Pre: 351 or BIOL 171, or consent. Recommended: BIOL 275/275L. (Cross-listed as MCB 461)

MICR 461L Immunology Lab (2)

(2 3-hr Lab) Basic exercises and experiments in immunology, immunochemistry, immuno-biology to illustrate principles of 461. Pre: 461 (or concurrent). (Cross-listed as MCB 461L)

MICR 463 Microbiology of Pathogens (3)

Host-parasite relationships in microbial diseases of humans and animals with emphasis on bacterial pathogens. Pre: 351. Co-requisite: 463L or consent.

MICR 463L Microbiology of Pathogens Lab (2)

(2 3-hr Lab) Characterization of bacterial pathogens. Isolation, identification, and diagnosis. Pre: 351L. Co-requisite: 463 or consent.

MICR 470 Bacterial Molecular Pathogenesis (3)

Fundamental mechanisms of bacterial infectious diseases or pathogenesis at the molecular level. Emphasis on bacterial virulence and host-pathogen interactions. Pre: 351/351L or consent.

MICR 470L Bacterial Molecular Pathogenesis Laboratory (2)

Modern techniques to study infectious diseases. Covers tissue culture and animal models to study virulence of extracellular and intracellular infecting bacteria, bacterial resistance mechanisms toward antibacterial drugs, and virulence factor assays. A-F only. Pre: 351 and 351L, 470 (or concurrent). (Fall only)

MICR 475 Bacterial Genetics (3)

Genetic analysis and molecular basis of transmission replication, mutation, and expression of heritable characteristics in prokaryotes. Pre: 351 or BIOL 275, or consent. (Cross-listed as MCB 475)

MICR 475L Bacterial Genetics Lab (2)

(2 3-hr Lab) Techniques for study of transfer and expression of prokaryotic genes: transformation, conjugation, transposon mutagenesis, preparation and analysis of plasmid and chromosomal DNA. Pre: 475 (or concurrent). (Cross-listed as MCB 475L)

MICR 485 Microbes and Their Environment (3)

Distribution, diversity, and roles of microorganisms in terrestrial, freshwater, and marine ecosystems. Importance of bacteria in pesticide degradation, bioremediation of oil spills, sewage treatment, biocontrol, food fermentation. Pre: BIOL 171 and CHEM 272, or consent.

MICR 485L Microbes and Their Environment Lab (2)

(2 3-hr Lab) Techniques for study of interaction of microorganisms with and within their natural habitats; symbiosis between microorganisms and plants and animals; role of microorganisms in element cycling; food fermentation by bacteria. Pre: 485 (or concurrent) or consent.

MICR 490 Virology (3)

Basic principles of virus biology. Topics include methods for virus study, virus structure, replication, gene expression, pathogenesis and host response. Pre: 351 or BIOL 275, or consent.

MICR 490L Virology Lab (2)

(2 3-hr Lab) General laboratory techniques and related theories in virology; including isolation, cell culture, assay, purification, and identification of viruses. Pre: 351/351L or BIOL 275/275L and 490 (or concurrent); or consent.

MICR 601 Molecular Cell Biology (3)

Provide fundamental concepts and dynamic characteristics of the molecules of the prokaryotic and eukaryotic cell, their biosynthesis and regulation, and the mechanisms that regulate cellular activities. A-F only. Pre: basic course in cell and molecular biology, or consent. (Fall only) (Cross-listed as MBBE 601)

MICR 602 Molecular Biology and Genetics (3)

Graduate-level basic course on molecular biology and genetics. Prepares students to understand advanced concepts in related subjects such as biochemistry, cell biology, cancer biology, immunology, plant genetics, and genomics. Pre: MBBE 402/BIOL 402 (with a minimum grade of B or higher), or with consent from instructor. (Alt. years: fall) (Cross-listed as MBBE 602)

MICR 614 Research Ethics (1)

Introduction to ethical issues faced by individuals and institutions involved in scientific research. Moral reasoning, humans and animals in research, mentoring, authorship, ownership of data and genetic technologies. MICR graduates only. A-F only. Pre: graduate standing in MICR or related field, or consent. (Once a year)

MICR 625 Advanced Immunology (3)

Detailed reports and discussions on selected advanced topics and current research literature. Pre: 461 or consent. (Alt. years: spring)

MICR 630 Microbial Genome (3)

Advanced studies of Microbial genome: relation to functional genomics, structural genomics, and proteomics. A-F only. Pre: 351 and one 400-level MICR course, or consent. (Alt. years)

MICR 632 Advanced Microbial Physiology (3)

Selected topics. Pre: 431 or consent. (Alt. years: spring)

MICR 652 Advanced Marine Microbiology (3)

Advanced studies of marine microorganisms in diverse habitats with consideration of applications of marine microbes, interactions with higher organisms, phylogeny and diversity, and past and current methods. A-F only. Pre: 351 and 401, or consent. (Alt. years)

MICR 655 Advanced Virology (3)

Detailed reports and discussions on selected advanced topics and current research literature. Pre: 463, 490, BIOC 441; or consent. (Alt. years: fall)

MICR 661 Regulations of Gene Expressions in Microorganisms (3)

Use of bioinformatic tools to understand comparative genomics, metabolic pathways, and protein evolution. A-F only. Pre: 351 and one 400 level MICR course, or consent. (Alt. years)

MICR 671 Bacterial Genetics (3)

Directed study and discussion of research literature on bacterial and bacterial virus mutation, genetic recombination, evolution and control mechanisms. Pre: graduate standing; undergraduates that have taken 475 may register with consent. (Alt. years: spring)

MICR 680 Advances in Microbial Ecology (3)

Highlights in microbial ecology; interaction of microorganisms with abiotic and biotic components of their environments. Modern techniques for study of autecology and synecology of microorganisms. Pre: 485 or consent. (Alt. years: spring)

MICR 681 Host-Parasite Relationships (3)

Mechanisms of pathogenicity of microorganisms and defense mechanisms of human and animal hosts. Review of contemporary literature. Pre: 463 or consent. (Alt. years: fall)

MICR 685 Molecular and Cellular Bacterial Pathogenesis (3)

Detailed examination of the molecular and cellular mechanisms of bacterial pathogenesis. Overview of key literature, synthesis of scientific problems into research proposals. Pre: 431, 463, or 470; or consent. (Alt. years: spring)

MICR 690 Seminar (1)

Required of graduate students. Repeatable unlimited times; only one credit will count toward the degree.

MICR 695 Research Literature Review (1)

Review of primary literature in a selected area of microbiology. Repeatable ten times; three credit limit. A-F only. Pre: graduate status or consent.

MICR 699 Directed Research (V)

Selected problems in microbiology. Repeatable unlimited times. Pre: consent.

MICR 700 Thesis Research (V)

Repeatable unlimited times.

MICR 746 Advanced Plant-Bacteria Interactions (3)

Molecular biology, genomics, molecular genetics, and infection mechanisms of bacterial plant pathogens and symbionts. Pre: PEPS 606 (with a minimum grade of B or better) or consent. (Cross-listed as PEPS 746)

MICR 795 Special Topics in Microbiology (V)

Selected topics in any aspect of microbiology. Repeatable unlimited times.

MICR 800 Dissertation Research (V)

Repeatable unlimited times.

NSCI 101 Natural Sciences and Life-Pulling the Puzzles Apart (1)

Journey through the Natural Sciences finding fun, excitement, and success in science, mathematics, engineering, medicine, and all that is the natural sciences. Focus upon challenging worldviews of belief, invention, impact, and ethics. CR/NC only.

NSCI 501 Seminar for Science Teachers (V)

Seminar and discussions of current and significant topics and problems in science where teachers can exchange new and innovative teaching ideas and strategies. Repeatable. Pre: in-service teachers or consent.

NSCI 503 Computers in Classroom (V)

Combined lecture, laboratory and discussion on the use of computers as a teaching tool in the classroom. To be taught in a hands-on manner appropriate for the science teachers. Restricted to in-service teachers or consent. Repeatable one time. A-F only.

NSCI 504 Mathematics Workshop for Teachers (V)

An in-depth study of topics from intermediate and high school mathematics. Restricted to in-service teachers or consent. Repeatable one time. A-F only.

NSCI 505 Physics Workshop for Teachers (V)

Major concepts of physics taught by means of hands-on conceptual activities for elementary and secondary teachers. Restricted to in-service teachers, or consent. Repeatable one time. (Cross-listed as PHYS 505)

NSCI 619 Seminar on Science Teaching (2)

Effective teaching methods; organization of courses, lectures, laboratory exercises; development and evaluation of examinations; computers and audiovisual aids. Open to graduate students in various science disciplines. Repeatable one time. (Cross-listed as ZOOL 619)

PHYS 100 Survey of Physics (3)

Mechanics, electricity and magnetism, waves, optics, atomic and nuclear physics. Only algebra and geometry used. For non-science majors.

PHYS 100L Survey of Physics Lab (1)

(1 3-hr Lab) Hooke’s law, falling bodies, collisions, Boyle’s law, electric and magnetic fields, induction, waves, optics. Pre: 100 (or concurrent).

PHYS 109 Physics in the Arts (3)

Introduction to physics of sound and light, with applications to music and visual arts: sound perception, harmony, musical scales, instruments; lenses, cameras, color perception and mixing. Uses algebra and geometry. Intended primarily for non-science majors.

PHYS 121 How Things Work: Physics for Everyday Life (3)

Introduction to physics and science in everyday life. It considers objects from our daily environment, and focuses on the principles such as motion, forces, heat, electromagnetism, optics, and modern physics. A-F only.

PHYS 151 College Physics I (3)

Non-calculus physics. Mechanics, wave motion, heat. Pre: MATH 140, or 215 or higher; or qualifying score on math assessment exam.

PHYS 151L College Physics Lab I (1)

(1 3-hr Lab) Introduction to experimental analysis, physical observation and measurement, experiments on conservation laws, fluid friction, oscillations. Pre: 151 (or concurrent).

PHYS 152 College Physics II (3)

Electricity, magnetism, optics, modern physics. Pre: 151 or 170.

PHYS 152L College Physics Lab II (1)

(1 3-hr Lab) Optics, electric and magnetic fields, DC and AC circuitry. Pre: 151L or 170L, and 152 (or concurrent).

PHYS 170 General Physics I (4)

Calculus-based mechanics of particles and rigid bodies: kinematics, force, energy, momentum, rotation, gravitation, fluids, oscillations and waves. Intended for physical science and engineering majors. Pre: MATH 242 (or concurrent) or MATH 252A (or concurrent). MATH 216 may be substituted with consent.

PHYS 170A Honors General Physics I (4)

Special format for topics: mechanics of particles and rigid bodies, wave motion, thermodynamics and kinetic theory. Pre: MATH 242 (or concurrent) or MATH 252A (or concurrent). MATH 216 may be substituted with consent. Co-requisite: 170L

PHYS 170L General Physics I Lab (1)

(1 3-hr Lab) Similar to 151L but at 170 level. Pre: 170 (or concurrent) or 170A (or concurrent).

PHYS 272 General Physics II (3)

Electricity and magnetism and geometric optics. Pre: 151 or 170 and MATH 242 or MATH 252A, MATH 216 may be substituted with consent.

PHYS 272A Honors General Physics II (3)

Special format for topics: electricity and magnetism and geometric optics. A-F only. Pre: 151 or 170 and MATH 242 or MATH 252A, MATH 216 may be substituted with consent. Co-requisite: 272L.

PHYS 272L General Physics II Lab (1)

(1 3-hr Lab) Similar to 152L but at 272 level. Pre: 151L or 170L, and 272 (or concurrent) or 272A (or concurrent).

PHYS 274 General Physics III (3)

Relativity, introduction to quantum mechanics, atomic and nuclear physics, and physical optics. Pre: 152 or 272 and MATH 243 (or concurrent) or MATH 253A (or concurrent); or consent.

PHYS 274L General Physics III Lab (2)

(1 4-hr Lab) Experiments illustrating selected concepts of 274, including diffraction and interference of light, wave nature of matter, photoelectric effect, atomic spectra, and semiconductors. Pre: 152L or 272L, and 274 (or concurrent).

PHYS 305 Computational Physics (4)

(3 Lec, 1 3-hr. Lab) Analysis of physical systems and problem solving using computers and numerical methods. Development of scientific writing skills; preparation of formal reports in style of scientific journal articles. Pre: 152 or 272 or 272A, and MATH 244 (or concurrent) or MATH 253A (or concurrent); or consent.

PHYS 310 Theoretical Mechanics I (3)

Particle dynamics, rigid-body dynamics, planetary motion. Pre: 170 or 170A; 272 or 272A; MATH 244 (or concurrent) or MATH 253A (or concurrent). Recommended: MATH 302 (or concurrent). (Fall only)

PHYS 311 Theoretical Mechanics II (3)

Rigid-body mechanics continued, fluid dynamics, wave motion, theory of relativity. Pre: 310.

PHYS 350 Electricity and Magnetism (3)

Electrostatic and magnetostatic fields in vacuum and in matter; induction; Maxwell’s equations; AC circuits. Pre: 272 or 272A; and MATH 244 (or concurrent) or MATH 253A (or concurrent). (Fall only)

PHYS 399 Individual Work in Advanced Physics (V)

Limited to students with a minimum cumulative GPA of 2.7 or a minimum GPA of 3.0 in physics.

PHYS 400 Applications of Mathematics in Physical Sciences (3)

Mathematical methods, techniques; applications to problems in physical sciences. Pre: MATH 244 or MATH 253A, and MATH 307 or 311; or consent. Recommended: upper division mathematics course.

PHYS 430 Thermodynamics and Statistical Mechanics (3)

Laws of thermodynamics, heat transfer, kinetic theory, statistical mechanics. Pre: 274 and MATH 244 or MATH 253A.

PHYS 440 Solid-State Physics I (3)

Crystal structure: lattice vibrations; phonon effects; electronic processes in solids (metals, semiconductors, and superconductors). Pre: 274 and 350 (or concurrent).

PHYS 441 Solid-State Physics II (3)

Energy-band calculations, optical processes, Josephson effect, theories of dielectrics and magnetism, physics of color centers, order-disorder transformation. Pre: 440.

PHYS 450 Electromagnetic Waves (3)

Field equations, plane, spherical and guided waves. Pre: 350.

PHYS 460 Physical Optics (3)

Fundamentals of classical physical optics emphasizing linear systems theory, including optical fields in matter, polarization phenomena, temporal coherence, interference and
diffraction (Fourier optics). Specialized applications include Gaussian beams, laser resonators, pulse propagation, and nonlinear optics. Pre: 450 (or concurrent with a minimum grade of C) or EE 372 (or concurrent with a minimum grade of C-), or consent. (Cross-listed as EE 470) DP

PHYS 470 General Relativity & Cosmology (3)

Introduction to general relativity & cosmology. Spacetime metrics, geodesics, Einstein field equations, black holes. Geometry of the universe, redshift, cosmological distances. Cosmological models, dark matters, dark energy. Big Bang nucleosynthesis, recombination, cosmic microwave background, inflation. Pre: 274; MATH 244 (or concurrent) or MATH 253A (or concurrent). Recommended: ASTR 242. (Alt. years: fall) (Cross-listed as ASTR 470)

PHYS 475 Electronics for Physicists (4)

(3 Lec, 1 3-hr Lab) Investigation of Kirchoff’s Laws, electromagnetic circuit theory. Fourier analysis and stability theory with circuits. Applications to physical measurements are stressed. A-F only. Pre: junior standing, and 152L or 272L.

PHYS 476 Modern Electronics for Physicists (3)

Introduction to high performance solid state instrumentation by means of practical research electronics: printed circuit board design/fabrication; complex programmable logic design/verification; integrated circuit SPICE simulation. Detector fabrication and test emphasis during final project. Pre: 475 (or equivalent) or consent. (Spring only)

PHYS 480 Quantum Mechanics I (3)

Wave mechanics, Schroedinger equation, angular momenta, potential problems. Pre: 274, 310, 350, 400 (or concurrent); either MATH 244 or 253A; and either MATH 311 or 307; or consent.

PHYS 480L Advanced Physics Lab (2)

Advanced experiments including angular correlations in positronium annihilation, optical polarization phenomena, chaos, measurements of c and the muon lifetime, crystal diffraction and the Mossbauer effect. Numerical simulations of particular physics experiments are included. Pre: 274L and 480 (or concurrent), or consent.

PHYS 481 Quantum Mechanics II (3)

Continuation of 480; atomic physics, scattering, perturbation theory. Pre: 480.

PHYS 481L Advanced Physics Lab (2)

Advanced experiments including angular correlations in positronium annihilation, optical polarization phenomena, chaos, measurements of c and the muon lifetime, crystal diffraction, and the Mossbauer effect. Numerical simulations of particle physics experiments are included. Pre: 274L, 480, and 480L; or consent.

PHYS 485 Professional Ethics for Physicists (1)

Student seminar on ethical principles and their application to research in physics and astronomy and closely-related fields. Historical examples will be presented and discussed by the participants. PHYS, ASTP, and ASTR majors only. A-F only. Pre: 310 or ASTR 300 (or concurrent), or consent.

PHYS 490 Modern Physics (3)

Introduction to nuclear and elementary-particle physics. Pre: 480 (or concurrent).

PHYS 505 Physics Workshop for Teachers (V)

Major concepts of physics taught by means of hands-on conceptual activities for elementary and secondary teachers. Restricted to in-service teachers, or consent. Repeatable one time. (Cross-listed as NSCI 505)

PHYS 600 Methods of Theoretical Physics (3)

Mathematical tools of theoretical physics. Continuation of 400 but with an independent selection of topics. Pre: 400 or consent. (Alt. years)

PHYS 610 Analytical Mechanics (3)

Dynamics of particles, particle systems; rigid bodies; Lagrangian and Hamiltonian equations; special relativity. Pre: 600 (or concurrent); or MATH 402.

PHYS 650 Electrodynamics I (3)

Potential theory, Maxwell’s equations, electromagnetic waves, boundary value problems. Pre: 450; and 600 (or concurrent), or MATH 402. (Alt. years)

PHYS 651 Electrodynamics II (3)

Relativistic electrodynamics, radiation by charged particles. Pre: 650. (Alt. years)

PHYS 660 Advanced Optics (3)

Contemporary advanced applications in optics including nonlinear optics and optical parametric oscillators, atomic lasers and laser systems, and free-electron lasers. Pre: 460. (Alt. even years)

PHYS 670 Quantum Mechanics (3)

Physical basis and formulation of quantum theory. Exact solutions of Schroedinger equation and their applications. Approximation methods. Applications to atomic, nuclear, and molecular physics. Pre: 400 or 481 or 600 and MATH 402.

PHYS 671 Quantum Mechanics (3)

Physical basis and formulation of quantum theory. Exact solutions of Schroedinger equation and their applications. Approximation methods. Applications to atomic, nuclear, and molecular physics. Pre: 670.

PHYS 690 Seminar (V)

Discussions and reports on physical theory and recent developments. CR/NC only. Pre: graduate standing or consent.

PHYS 694 Condensed Matter Seminar (1)

Results and discussions of current topics in condensed matter physics. Repeatable six times with consent.

PHYS 695 Seminar on Atomic and Solid-State Physics (1)

Reports and discussion on recent developments in atomic, surface, and solid-state physics. Repeatable five times with consent.

PHYS 696 Seminar on Elementary Particle Physics (1)

Reports and discussion on recent developments in elementary particle physics. Repeatable four times. Pre: consent.

PHYS 699 Directed Research (V)

Repeatable unlimited times. Pre: consent.

PHYS 700 Thesis Research (V)

Research for master’s thesis. Repeatable unlimited times.

PHYS 711 Topics in Particles and Fields (3)

Topics in current theoretical research; e.g., unified field theories, general relativity, gravitation, and cosmology. Repeatable four times. Pre: consent.

PHYS 712 Special Topics: Experimental Physics (3)

Topics in current experimental research in low-energy physics, high-energy physics, cross-disciplinary physics. Repeatable in different topics. Pre: consent.

PHYS 713 Advanced Topics in Condensed Matter Theory (3)

Topics in condensed matter theory, e.g., group theory, many-body techniques, renormalization group, density functional theory, other topics of current interest. Repeatable four times. Pre: 670 and consent.

PHYS 730 Statistical Physics I (3)

Equilibrium thermodynamics; Gibbs ensembles; quantum statistics; ideal and non-ideal Fermi; Bose and Boltzmann gases; phase transitions; and critical phenomena. Pre: 670. (Alt. years)

PHYS 731 Statistical Physics II (3)

Nonequilibrium thermodynamics, transport theory, fluctuation dissipation theorem, many-body Green’s function methods, normal Fermi and Bose liquids, superfluidity, superconductivity. Pre: 670 and 730. (Alt. years)

PHYS 760 Modern General Relativity (3)

Differential geometry, special relativity, Einstein equations, gravitational phenomena, equivalence principles, black holes, gravitational waves, cosmology, relativistic stars, experimental tests, computational techniques. Graduate students only in PHYS or ASTR. (Alt. years: fall) (Crosslisted as ASTR 760)

PHYS 772 Quantum Field Theory I (3)

Relativistic wave equations and their solutions. Dirac’s theory of the electron, propagator techniques. Applications to quantum electrodynamics. Pre: 671. (Alt. years)

PHYS 773 Quantum Field Theory II (3)

Local gauge invariance, Yang-Mills theory: quantum chromodynamics, spontaneous symmetry breaking and Goldstone bosons; the standard electroweak theory; grand unified theories. Pre: 772. (Alt. years)

PHYS 777 Nuclear and Particle Physics (3)

Nuclear physics; electrodynamics; hadron structure and partons. Techniques of particle physics. Pre: 481 and 671. (Alt. years)

PHYS 778 Nuclear and Particle Physics II (3)

Quantum chromodynamics; electroweak interactions; the standard model. Techniques of particle physics. Pre: 777 or consent. (Alt. years)

PHYS 785 Solid-State Theory (3)

Crystal symmetry, electronic excitations in solids, transport theory, optical properties, cohesive energy, lattice vibrations, electron-phonon interaction, electron-electron interaction, magnetism, superconductivity. Pre: 670. (Alt. years)

PHYS 786 Solid-State Theory (3)

Crystal symmetry, electronic excitations in solids, transport theory, optical properties, cohesive energy, lattice vibrations, electron-phonon interaction, magnetism, superconductivity. Pre: 785. (Alt. years)

PHYS 800 Dissertation Research (V)

Research for doctoral dissertation. Repeatable unlimited times.

ZOOL 101 Principles of Zoology (3)

Structure, development, physiology, reproduction, evolution, behavior, and ecology of animals.

ZOOL 101L Principles of Zoology Laboratory (1)

Laboratory to accompany 101. Pre: 101 (or concurrent).

ZOOL 200 Marine Biology (3)

Biology and ecology of marine plants and animals; coral reefs, the deep sea, rocky shores, marine mammals, fisheries, aquaculture, pollution, and conservation of marine resources.

ZOOL 200L Marine Biology Lab (1)

(1 3-hr Lab) Laboratory, field trips to accompany 200. Pre: 200 (or concurrent).

ZOOL 340L Parasitology Lab (2)

(2 3-hr Lab) Laboratory to accompany 340. Pre: 340 (or concurrent) and BIOL 275.

ZOOL 399 Directed Study (V)

Pre: written consent.

ZOOL 420 Developmental Biology (3)

Fundamental principles, methods, concepts, and significance of developmental biology, emphasizing experimental methods. Pre: BIOL 275. Recommended: BIOL 407.

ZOOL 420L Developmental Biology Lab (2)

(2 3-hr Labs) Analysis of animal development by experimental methods, using local organisms. Pre: 420 (or concurrent) and BIOL 275, or consent. Recommended: BIOL 407.

ZOOL 430 Animal Physiology (3)

Introduction to function of organs, tissues, and cells, especially in vertebrates. Nerve and muscle physiology, endocrinology, circulation, respiration, excretion, and temperature regulation. A-F only. Pre: BIOL 275. Corequisite: 430L

ZOOL 430L Animal Physiology Lab (2)

Laboratory investigation of function of organs, tissues, and cells, especially in vertebrates. Nerve and muscle physiology, circulation, membrane transport, respiration, excretion. Pre: BIOL 275. Co-requisite: 430.

ZOOL 432 Comparative Physiology (3)

Physicalchemical cellular mechanisms underlying function of organ systems; general principles inferable from study of adaption to diverse environments. Pre: BIOL 171 and 172, and MBBE 402 (or concurrent) or BIOC 441 (or concurrent); or consent.

ZOOL 442 Introduction to Neuroscience (3)

Nerve cells, their signaling capabilities and the developmental organization of nervous systems, both invertebrate and vertebrate, for sensory reception, integration, behavioral command and learning;insights from on-going research using molecular,
genetic, biophysical, and imaging methods. Pre: BIOL 275 or consent. (Spring only)

ZOOL 460 Avian Biology (3)

Broad coverage of the morphology, physiology, ecology, behavior, and evolution of birds, emphasizing the relation of birds to general theory in biology. Pre: BIOL 265.

ZOOL 466 Fisheries Science (3)

General characteristics of fisheries; harvesting methods; principles and techniques to derive data and analyze fished populations. Field trips. Pre: one of the following: 410, 465, 470, 608, or 620; or consent.

ZOOL 467 Ecology of Fishes (3)

Reproduction, early life history, age and growth, feeding, niche specificity, competitive interactions, communities, and evolutionary mechanisms. Pre: 465 or consent.

ZOOL 470 Limnology (2)

Biology, physics, chemistry of lakes, streams, estuaries. Pre: BIOL 172 or consent. Co-requisite: 470L.

ZOOL 470L Limnology Lab (1)

(1 3-hr Lab) Experimental and descriptive field projects on the biology, chemistry, hydrology, and physics of lakes, streams, and estuaries. Pre: BIOL 172 or consent. Corequisite: 470. (Alt. years)

ZOOL 475L Biology of the Invertebrates Lab (2)

(2 3-hr Lab) Pre: BIOL 172 and CHEM 161, or consent. Co-requisite: 475.

ZOOL 485 Biogeography (3)

Distribution of plants and animals and processes that cause, maintain, and modify them. Approach is synthetic and dynamic. Pre: BIOL 172.

ZOOL 490 (Alpha) Seminar in Zoology (1)

Reports on research, reviews of literature, or research experience. Required of students majoring in zoology or entomology. (B) general zoology; (D) animal behavior; (E) ecology; (F) physiology; (G) developmental biology; (H) marine biology. Repeatable 2 times per alpha, credits earned for 3 credits only. Pre: 306 or equivalent or consent for (D).

ZOOL 492 Teaching Internship (1)

Teaching internship in zoology. Required of ZOOL BS degree students. ZOOL BS majors only. CR/NC only

ZOOL 499 Directed Reading or Research (V)

Performance of a laboratory, field or library research project under the direction of a faculty advisor. Preparation of a proposal and written final report required. Limited to zoology majors. Repeatable eight times, up to 45 credits.

ZOOL 606 Animal Behavior (3)

Lectures and critical discussions on the mechanisms of animal behavior, social and interspecific behaviors, behavioral ecology, and evolutionary theory. Pre: graduate standing.

ZOOL 606L Principles of Animal Behavior Lab (1)

(1 3-hr Lab) Group or individual research projects depending on interest of students. Pre: 606 (or concurrent).

ZOOL 607 Genetics of Behavior and Evolution (1)

Introduction to concepts and techniques in the genetics of behavior. Techniques include next gen sequencing, GWAS, and more. Students may use real data to analyze associations between genotype and phenotype. Repeatable one time. Graduate students only. (Fall only)

ZOOL 608 Fish Behavior and Sensory Biology (2)

Lectures, readings and presentations on sensory systems and behavior of fishes. A-F only. Pre: 430, 606, BIOL 306, BIOL 465; or consent. Co-requisite: 608L. (Alt. years)

ZOOL 608L Fish Behavior and Sensory Biology Laboratory (1)

Laboratory study of fish sensory systems and behavior. A-F only. Pre: 430, 606, BIOL 306, BIOL 465; or consent. Co-requisite: 608. (Alt. years)

ZOOL 610 Topics in Development and Reproductive Biology (V)

Discussion and survey of literature on specific topics; some field and lab work may be required. Repeatable three times.

ZOOL 619 Seminar on Science Teaching (2)

Effective teaching methods, organization of courses, lectures, laboratory exercises; development and evaluation of examinations; computers and audiovisual aids. Open to graduate students in various science disciplines. Repeatable one time. (Cross-listed as NSCI 619)

ZOOL 620 Marine Ecology (3)

Principles of ecology of marine biota and environment. Pre: graduate standing in zoology, oceanography, or botany; or consent.

ZOOL 623 Quantitative Field Ecology (3)

(1 Lec, 1 2-hr Lab, 1 Discussion) Formal quantitative approach in identifying, designing, performing, analyzing, and interpreting ecological field problems. A-F only. Pre: 439, 439L, and 631; or consent. (Alt. years)

ZOOL 625 Evolution in Marine Systems (3)

Fundamental elements of modern evolutionary theory and research, with a strong focus on marine organisms and ecosystems. A-F only. Pre: instructor approval. (Alt. years: fall)

ZOOL 631 Introduction to Statistical Modeling in Biology (4)

(3 Lec, 1 2-hr Discussion) Statisticalmethods for biological research. Covers: probability; likelihood-based inference; hypothesis testing; linear and generalized linear models; common statistical tests; statistical programming. Pre: MATH 215 or 216 or 241 or 251A or NREM 203 (or equivalent), or consent.

ZOOL 632 Advanced Biometry (4)

(3 Lec, 1 2-hr Discussion) Multivariate statistical methods: multiple regression and correlation; multiway anova; general linear models; repeated measures and multivariate anova; loglinear analysis and logistic regression. Pre: 631 or consent.

ZOOL 642 Cellular Neurophysiology (3)

Biophysical and membrane mechanisms of conduction, synaptic transmission, and other electrical responses of nerve cells. Pre: consent. (Alt years: spring)

ZOOL 652 Population Biology (3)

Theory and applications of population biology; behavior of population models, as revealed by analytical methods and computer simulation; application to population problems such as endangered species; discussion of classical and current literature in population biology. Pre: one of the following: 620, 623, BOT 456, NREM 680, PEPS 671; or consent. (Cross-listed as BOT 652)

ZOOL 670 Scientific Teaching Tools to Promote Active Learning (2)

Graduate level course to train students in the pedagogical tools to enhance active learning in STEM classes. Includes discussions of the primary literature, demonstrations and practice using scientific teaching techniques. BOT or ZOOL or MBIO majors only. Graduate students only. (Alt. years: spring) (Cross-listed as BOT 670)

ZOOL 690 Conservation Biology (3)

Theories and concepts of ecology, evolution and genetics for conservation of biological diversity. Topics will include restoration ecology, management planning, laws and policies, biological invasions. (Cross-listed as BOT 690 and NREM 690)

ZOOL 691 (Alpha) Seminar in Zoology (1)

Reports on research or reviews of literature. Graduate students required to take this or one topics course (710–719) per year. (B) general zoology; (C) zoology literature; (D) animal behavior; (E) ecology; (F) animal physiology; (G) development biology; (H) marine biology; (I) systematics and evolution. Each alpha is repeatable five times.

ZOOL 699 Directed Research (V)

Directed research and reading in various fields of zoology. Repeatable unlimited times.

ZOOL 700 Thesis Research (V)

Repeatable unlimited times.

ZOOL 710 Topics in Biometry (V)

Selected advanced topics in experimental design or data analysis for biologists. Repeatable unlimited times. ZOOL majors only. Pre: 631 and 632, or consent.

ZOOL 712 Topics in Nerve/Muscle Physiology (V)

Advanced treatment of selected topics under current active investigation. Repeatable unlimited times. ZOOL majors only. Pre: a graduate course in physiology, neurology, or related subjects and consent.

ZOOL 714 Topics in Animal Behavior (V)

Lecturediscussion of selected topics. Repeatable three times, up to nine credits. ZOOL majors only. Pre: consent.

ZOOL 715 Topics in Invertebrate Zoology (V)

Comparative morphology, development, taxonomy, phylogeny. Repeatable three times, up to nine credits.

ZOOL 716 Topics in Fish and Fisheries Biology (V)

Lecture-discussion of various aspects. Repeatable up to nine credits. ZOOL majors only.

ZOOL 718 Topics in Animal Physiology (V)

Selected problems in environmental physiology, electro-physiology, or neurophysiology. Basic concepts and measurements of function at the organismic or cellular level. Repeatable three times, up to nine credits.

ZOOL 719 Topics in Systematics and Evolution (V)

Selected problems of current or historic interest. Repeatable three times, up to nine credits. Pre: consent

ZOOL 739 Topics in Ecology (V)

Advanced topics in ecology; discussion of literature and in depth survey of specific areas. Repeatable three times up to nine credits. Pre: graduate standing and consent.

ZOOL 750 Topics in Conservation Biology (V)

Advanced topics in conservation and environmental biology. Repeatable three times, up to twelve credits. A-F only. Pre: consent. (Cross-listed as BOT 750)

ZOOL 780 Foundations of Evolution and Ecology I (4)

Graduate level introduction to evolution and ecology emphasizing foundational literature, modern models and inference, and major questions in evolution and ecology. Topics include population ecology, community ecology, the genetics of populations, systematics, and speciation. (Alt. years: fall)

ZOOL 781 Foundations of Evolution and Ecology II (4)

Graduate level introduction to evolution and ecology emphasizing foundational literature, modern models and inference, and major questions in evolution and ecology. This is the second semester continuation of 780. (Alt. years: spring)

ZOOL 800 Dissertation Research (V)

Repeatable unlimited times.